RetrogeneDB ID:

retro_ogar_2232

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873604.1:6402288..6402661(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000013494
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_2232
GTGGCAGATGATGAGTAAAGACCCTGCTTTTGAGGAAGTAAATAAAGAAATTGGAGGAGGTGCAGAAGGTGGACAGGGAA
AAAAACAGGGACTTTTTTCCTGAAGAATTGAGATGTATGATATATGGCTTTGGAGATGAGCAGAATCCTTATACTGAGTC
AGTAGATATTCTTGAAGGCCTTGTCATAGCATTCATTGCTGAATGACTCACAAGGTCATATCTATTGGAGGACAAGCTCG
AGTACAAGTTGAAGATATAGTCTTGCTTTCAAGAGACCCCAGGAAATTTGCTAGGGTTAAAGACTTGCTTACTATGAATA
AAGAATTTTGAAAGGGGCTAGAAAAAGCATTTGATGAAGCAAACTATGGATCT

ORF - retro_ogar_2232 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.78 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMADEE-EDPAFEEENEEIGGGAEGGQGKRKRLFS-KELRCMMYGFGDDQNPYTESVDILEDLVIEFITE-
.AD.E..DPAFEE.N.EIGGGAEGGQGK...LFS..ELRCM.YGFGD.QNPYTESVDILE.LVI.FI.E.
RetrocopyVADDE>KDPAFEEVNKEIGGGAEGGQGKKQGLFS>EELRCMIYGFGDEQNPYTESVDILEGLVIAFIAE<
ParentalMTHKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEEL-KRARKAFDEANYGS
MTHK..SIG.Q.RVQVEDIV.L...DPRKFARVKDLLTMN.E..K...KAFDEANYGS
RetrocopyMTHKVISIGGQARVQVEDIV-LLSRDPRKFARVKDLLTMNKEF*KGLEKAFDEANYGS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.