Parental gene: | PSMD4, ENSSSCG00000006628 |
| Aliases: | None |
| Description: | Sus scrofa proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 (PSMD4), mRNA. [Source:RefSeq mRNA;Acc:NM_001044535] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 4:107246978..107257425(-) |
>ENSSSCG00000006628
ATGGTGTTAGAAAGCACTATGGTTTGTGTGGACAACAGTGAGTATATGCGGAATGGGGACTTCTTGCCTACCCGGCTGCA
GGCTCAACAGGATGCCGTCAACATAGTCTGTCACTCGAAGACCCGCAGCAACCCTGAGAACAACGTGGGCCTCATCACCC
TGGCCAATGACTGTGAAGTGCTGACCACACTCACCCCTGACACCGGCCGCATCCTGTCTAAGCTCCACACTGTCCAACCC
AAGGGCAAGATCACGTTCTGCACTGGCATCCGCGTGGCCCATCTGGCCCTGAAGCACCGGCAGGGCAAGAATCACAAGAT
GCGTATCATTGCCTTCGTGGGAAGCCCTGTGGAGGACAATGAGAAAGATCTGGTGAAATTGGCTAAACGCCTCAAGAAGG
AGAAAGTAAATGTTGACATTATCAATTTTGGGGAAGAGGAGGTGAACACAGAAAAGCTGACTGCCTTCGTAAACACATTG
AATGGCAAAGATGGAACCGGTTCTCATCTGGTGACAGTGCCTCCTGGGCCCAGCTTGGCTGATGCCCTCATCAGTTCTCC
GATTCTGGCTGGGGAAGGTGGTGCCATGCTGGGTCTTGGTGCCAGTGACTTTGAATTTGGAGTGGATCCCAGTGCTGATC
CTGAGCTGGCCCTGGCCCTGCGTGTTTCTATGGAAGAGCAGCGGCAGCGGCAGGAGGAGGAGGCGCGGCGGGCAGCTGCC
GCCTCTGCCGCGGAGGCCGGGATTGCTACGACTGGGACTGAAGACTCCGACGATGCCCTGCTGAAGATGACCATCAGCCA
GCAGGAGTTTGGCCGCACCGGGCTCCCTGACCTAAGCAGTATGACCGAGGAAGAACAGATTGCTTATGCCATGCAGATGT
CCCTGCAGGGCGCAGAATTCGGCCAGGCAGAATCCGCTGACATTGATGCCAATTCAGCCATGGACACATCTGAGCCTGCC
AAGGAGGAGGATGATTATGACGTGATGCAGGACCCCGAGTTCCTTCAGAGTGTCCTTGAGAACCTTCCAGGCGTGGATCC
CAACAATGAGGCCATTCGAAATGCCATGGGCTCCCTGGCCTCACAGGCCACCAAGGATGGCAAGAAGGACAAGAAGGAGG
AGGACAAGAAGTGA
ATGGTGTTAGAAAGCACTATGGTTTGTGTGGACAACAGTGAGTATATGCGGAATGGGGACTTCTTGCCTACCCGGCTGCA
GGCTCAACAGGATGCCGTCAACATAGTCTGTCACTCGAAGACCCGCAGCAACCCTGAGAACAACGTGGGCCTCATCACCC
TGGCCAATGACTGTGAAGTGCTGACCACACTCACCCCTGACACCGGCCGCATCCTGTCTAAGCTCCACACTGTCCAACCC
AAGGGCAAGATCACGTTCTGCACTGGCATCCGCGTGGCCCATCTGGCCCTGAAGCACCGGCAGGGCAAGAATCACAAGAT
GCGTATCATTGCCTTCGTGGGAAGCCCTGTGGAGGACAATGAGAAAGATCTGGTGAAATTGGCTAAACGCCTCAAGAAGG
AGAAAGTAAATGTTGACATTATCAATTTTGGGGAAGAGGAGGTGAACACAGAAAAGCTGACTGCCTTCGTAAACACATTG
AATGGCAAAGATGGAACCGGTTCTCATCTGGTGACAGTGCCTCCTGGGCCCAGCTTGGCTGATGCCCTCATCAGTTCTCC
GATTCTGGCTGGGGAAGGTGGTGCCATGCTGGGTCTTGGTGCCAGTGACTTTGAATTTGGAGTGGATCCCAGTGCTGATC
CTGAGCTGGCCCTGGCCCTGCGTGTTTCTATGGAAGAGCAGCGGCAGCGGCAGGAGGAGGAGGCGCGGCGGGCAGCTGCC
GCCTCTGCCGCGGAGGCCGGGATTGCTACGACTGGGACTGAAGACTCCGACGATGCCCTGCTGAAGATGACCATCAGCCA
GCAGGAGTTTGGCCGCACCGGGCTCCCTGACCTAAGCAGTATGACCGAGGAAGAACAGATTGCTTATGCCATGCAGATGT
CCCTGCAGGGCGCAGAATTCGGCCAGGCAGAATCCGCTGACATTGATGCCAATTCAGCCATGGACACATCTGAGCCTGCC
AAGGAGGAGGATGATTATGACGTGATGCAGGACCCCGAGTTCCTTCAGAGTGTCCTTGAGAACCTTCCAGGCGTGGATCC
CAACAATGAGGCCATTCGAAATGCCATGGGCTCCCTGGCCTCACAGGCCACCAAGGATGGCAAGAAGGACAAGAAGGAGG
AGGACAAGAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 104 .33 RPM |
| SRP014902_testis | 123 .20 RPM |
| SRP018856_adipose | 202 .39 RPM |
| SRP018288_kidney | 88 .06 RPM |
| SRP018288_lung | 71 .79 RPM |
| SRP018288_liver | 55 .33 RPM |
| SRP018288_heart | 55 .29 RPM |
| SRP035408_liver | 59 .18 RPM |
| SRP035408_brain | 136 .32 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000012565 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000007357 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000007446 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000159352 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000010139 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000000871 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000013893 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000016911 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000007019 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_981 | 74.00 | 51.99 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSSCG00000006628 retrocopies