Parental gene:

PSMD4, ENSPTRG00000013893

Aliases:None
Description:Pan troglodytes proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 (PSMD4), mRNA. [Source:RefSeq mRNA;Acc:NM_001137557]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:129438839..129451606(+)


>ENSPTRG00000013893
ATGGTGTTGGAAAGCACTATGGTGTGTGTGGACAACAGTGAGTATATGCGGAATGGAGACTTCTTGCCCACCAGGCTGCA
GGCCCAGCAGGATGCTGTCAACATAGTTTGTCATTCAAAGACCCGCAGCAACCCTGAGAACAACGTGGGCCTTATCACAC
TGGCTAATGACTGTGAAGTGCTGACTACACTCACCCCAGACACTGGCCGTATCCTGTCCAAGCTACATACTGTCCAACCC
AAGGGCAAGATCACCTTCTGCACGGGCATCCGCGTGGCCCATCTGGCTCTGAAGCACCGACAAGGCAAGAATCACAAGAT
GCGCATCATTGCCTTTGTGGGAAGCCCAGTGGAGGACAATGAGAAGGATCTGGTGAAACTGGCTAAACGCCTCAAGAAGG
AGAAAGTAAATGTTGACATTATCAATTTTGGGGAAGAGGAGGTGAACACAGAAAAGCTGACAGCCTTTGTAAACACGTTG
AATGGCAAAGATGGAACCGGTTCTCATCTGGTGACAGTGCCTCCTGGGCCCAGTTTGGCTGATGCTCTCATCAGTTCTCC
GATTTTGGCTGGTGAAGGTGGTGCCATGCTGGGTCTTGGTGCCAGTGACTTTGAATTTGGAGTAGATCCCAGTGCTGATC
CTGAGCTGGCCTTGGCCCTTCGTGTATCTATGGAAGAGCAGCGGCAGCGGCAGGAGGAGGAGGCCCGGCGGGCAGCTGCA
GCTTCTGCTGCTGAGGCCGGGATTGCTACTACTGGGACTGAAGACTCAGACGATGCCCTGCTGAAGATGACCATCAGCCA
GCAAGAGTTTGGCCGCACTGGGCTTCCTGACCTAAGCAGTATGACTGAGGAAGAGCAGATTGCTTATGCCATGCAGATGT
CCCTGCAGGGAGCAGAGTTTGGCCAGGCGGAATCAGCAGACATTGATGCCAGCTCAGCTATGGACACATCCGAGCCAGCC
AAGGAGGAGGATGATTACGACGTGATGCAGGACCCCGAGTTCCTTCAGAGTGTCCTAGAGAACCTCCCAGGTGTGGATCC
CAACAATGAAGCCATTCGAAATGCTATGGGCTCCCTGGCCTCCCAGGCCACCAAGGACGGCAAGAAGGACAAGAAGGAGG
AAGACAAGAAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 147 .98 RPM
SRP007412_cerebellum 106 .51 RPM
SRP007412_heart 96 .88 RPM
SRP007412_kidney 93 .41 RPM
SRP007412_liver 106 .78 RPM
SRP007412_testis 405 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000012565 ortholog_one2one 1 retrogene
retro_cfam_591,
Callithrix jacchus ENSCJAG00000007357 ortholog_one2one 1 retrogene
retro_cjac_2808,
Dasypus novemcinctus ENSDNOG00000007446 ortholog_one2one 1 retrogene
retro_dnov_1556,
Homo sapiens ENSG00000159352 ortholog_one2one 1 retrogene
retro_hsap_2531,
Nomascus leucogenys ENSNLEG00000010139 ortholog_one2one 1 retrogene
retro_nleu_1450,
Pongo abelii ENSPPYG00000000871 ortholog_one2one 1 retrogene
retro_pabe_1862,
Sus scrofa ENSSSCG00000006628 ortholog_one2one 1 retrogene
retro_sscr_981,
Tupaia belangeri ENSTBEG00000016911 ortholog_one2one 1 retrogene
retro_tbel_238,
Tursiops truncatus ENSTTRG00000007019 ortholog_one2one 1 retrogene
retro_ttru_903,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1474 89.05 88.86
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Download FASTA sequences of all ENSPTRG00000013893 retrocopies