Parental gene:

RAD23B, ENSSSCG00000005436

Aliases:None
Description:RAD23 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:9813]
Organism:Pig (Sus scrofa)
Coordinates:1:278901472..278948163(+)


>ENSSSCG00000005436
ATGCAGATCACCCTGAAGACCCTCCAGCAGCAGACCTTCAAGATCGACATCGACCCCGAGGAGACGGTGAAAGCACTGAA
AGAGAAGATTGAATCTGAAAAGGGGAAAGATGCCTTTCCTGTAGCAGGTCAAAAATTAATTTATGCAGGCAAAATCCTCA
ATGATGATACTGCTCTAAAAGAATATAAAATTGATGAGAAAAACTTCGTGGTAGTTATGGTGACAAAACCCAAAGCAGTG
ACAACACCAGCACCGGCTACAACTCAGCAATCAAATTCTGCCACCACTACCACAGTTAGTTCCTCCACAGCACCAGCTGC
GGCTCAGGCCCCAACCCCAGCCCCTGCTTTGGCTCCTACTCCCACTCCTGCATCCATCACCCCAGCATCAACGACAGCAT
CTTCTGAACCTGCACCTGCTAGTGCAACGAAACAAGAGAAACCTGCAGAAAAGCCAGCAGAAACACCAGTGGCTACTAGC
CCAACATCAACTGACAGTACATCAGGAGATTCTTCTCGGTCAAACCTTTTTGAAGATGCAACAAGTGCACTTGTGACAGG
TCAGTCCTACGAGAATATGGTAACTGAGATCATGTCAATGGGATATGAACGAGAGCAAGTAATTGCAGCCCTGAGAGCCA
GTTTCAACAACCCTGACAGAGCAGTGGAATATCTTTTAATGGGAATTCCTGGAGATAGAGAAAGTCAGGCTGTGGTTGAC
CCGCCTCCAGCAGCTAGTACAGGGGCTCCTCAATCTTCAGTGGCTGCAGCTGCAGCAACTACGACAGCAACGACAACAAC
AACAAGTTCTGGAGGACATCCTCTTGAATTTTTACGGAATCAGCCTCAGTTTCAACAGATGAGACAAATTATTCAACAGA
ATCCTTCCCTGCTTCCAGCATTGCTACAACAGATAGGTCGAGAAAATCCTCAGTTACTGCAGCAAATTAGCCAACACCAG
GAACATTTTATTCAGATGTTAAATGAACCAGTTCAAGAAGCTGGTAGTCAAGGAGGAGGGGGTGGAGGTGGCAGCGGAGG
AATTGCAGAAGCTGGAAGTGGTCACATGAACTACATTCAAGTAACGCCTCAGGAAAAAGAAGCTATAGAAAGGTTAAAGG
CATTAGGATTTCCTGAAGGACTTGTGATACAGGCATATTTTGCTTGTGAGAAGAATGAGAACTTGGCTGCCAATTTTCTT
CTACAGCAAAACTTTGATGAAGATTGA

Library Parental gene expression (RPM)
SRP014902_placenta 74 .73 RPM
SRP014902_testis 94 .34 RPM
SRP018856_adipose 79 .78 RPM
SRP018288_kidney 123 .72 RPM
SRP018288_lung 187 .97 RPM
SRP018288_liver 178 .46 RPM
SRP018288_heart 107 .00 RPM
SRP035408_liver 102 .54 RPM
SRP035408_brain 135 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001926 ortholog_one2one 1 retrogene
retro_btau_877,
Callithrix jacchus ENSCJAG00000016908 ortholog_one2many 2 retrogenes
retro_cjac_3865, retro_cjac_4184,
Dasypus novemcinctus ENSDNOG00000001174 ortholog_one2one 2 retrogenes
retro_dnov_1982, retro_dnov_989,
Equus caballus ENSECAG00000021928 ortholog_one2one 1 retrogene
retro_ecab_361,
Homo sapiens ENSG00000119318 ortholog_one2one 2 retrogenes
retro_hsap_2611, retro_hsap_3754,
Gorilla gorilla ENSGGOG00000002511 ortholog_one2one 1 retrogene
retro_ggor_1829,
Loxodonta africana ENSLAFG00000007533 ortholog_one2one 1 retrogene
retro_lafr_1109,
Macaca mulatta ENSMMUG00000014944 ortholog_one2one 2 retrogenes
retro_mmul_1476, retro_mmul_1725,
Nomascus leucogenys ENSNLEG00000017319 ortholog_one2one 1 retrogene
retro_nleu_1590,
Oryctolagus cuniculus ENSOCUG00000007316 ortholog_one2many 1 retrogene
retro_ocun_1429,
Otolemur garnettii ENSOGAG00000014216 ortholog_one2one 1 retrogene
retro_ogar_3040,
Pongo abelii ENSPPYG00000019477 ortholog_one2one 2 retrogenes
retro_pabe_2344, retro_pabe_3162,
Pan troglodytes ENSPTRG00000021229 ortholog_one2one 1 retrogene
retro_ptro_1760,
Sarcophilus harrisii ENSSHAG00000011925 ortholog_one2many 1 retrogene
retro_shar_248,
Tursiops truncatus ENSTTRG00000007597 ortholog_one2one 1 retrogene
retro_ttru_1401,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_770 81.18 88.97
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Download FASTA sequences of all ENSSSCG00000005436 retrocopies