Parental gene:

RAD23B, ENSBTAG00000001926

Aliases:None
Description:UV excision repair protein RAD23 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q29RK4]
Organism:Cow (Bos taurus)
Coordinates:8:98681863..98726100(+)


>ENSBTAG00000001926
ATGCTGGTCACCCTGAAGACCCTCCAGCAGCAGACCTTCAAGATCGACATCGACCCCGACGAGACGGTGAGAGCACTGAA
AGAGAAGATTGAATCCGAAAAGGGTAAAGATGCCTTTCCTGTAGCAGGTCAAAAGTTAATTTATGCAGGCAAAATCCTCA
ATGATGATACTGCTCTAAAAGAATATAAAATTGATGAGAAAAACTTCGTGGTAGTTATGGTGACAAAACCTAAAGCAGTG
ACAACACCAGCACCAGCTACAACTCAGCAGTCAAATTCTGCCGCCACCACCACAGTCAGTTCCTCCACAGCGCCAGCTGT
GACTCAGGCCCCAGCCCCTGCCCCCGCTTCGGCTCCCACTCCCACACCTGTGTCTGTCACTCCAGCACCGACGACAGCAT
CTTCTGAGCCTGCGCCTGCTAGTGCAGCGAAGCAGGAGAAGCCTGCGGAGCGGCCAGTGGAAACCCCAGTGGCCACCACC
CCAACGTCAACTGACAGTACATCAGGTGATTCTTCTCGGTCAAACCTTTTTGAAGATGCAACAAGTGCACTTGTGACAGG
TCAGTCTTACGAGAATATGGTAACTGAGATCATGTCAATGGGCTATGAACGAGAGCAAGTAATTGCAGCCCTGAGAGCCA
GTTTCAACAACCCTGACAGAGCAGTGGAGTATCTCTTAATGGGAATTCCTGGAGATCGAGAAAGTCAGGCTGTGGTTGAC
CCCCCTCCAGCAGCTAGTACTGGGGCTCCTCAGTCTTCAGTGGCTGCAGCCGCAGCAACTACGACAGCAACAACTACAAC
AACAAGTTCTGGAGGACACCCTCTTGAATTTTTACGGAATCAGCCTCAGTTTCAACAGATGAGGCAAATTATTCAACAGA
ATCCTTCCCTGCTTCCAGCATTGCTACAACAGATAGGTCGAGAAAATCCTCAGTTACTTCAGCAAATTAGCCAACATCAG
GAGCATTTTATTCAGATGTTAAATGAACCAGTTCAAGAAGCTGGTGGTCAAGGAGGAGGGGGAGGAGGTGGCAGTGGAGG
AATCGCAGAAGCTGGAGGTGGTCATATGAACTACATTCAAGTAACGCCTCAGGAAAAAGAAGCTATAGAAAGGTTAAAGG
CATTAGGATTTCCTGAAGGACTTGTGATACAAGCATATTTTGCTTGTGAGAAGAATGAGAACTTGGCTGCCAATTTTCTT
CTACAGCAAAACTTTGATGAAGATTGA

Library Parental gene expression (RPM)
SRP017611_brain 66 .01 RPM
SRP017611_kidney 65 .14 RPM
SRP017611_liver 82 .30 RPM
ERP005899_muscle 95 .23 RPM
ERP005899_liver 123 .86 RPM
SRP030211_testis 39 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016908 ortholog_one2many 2 retrogenes
retro_cjac_3865, retro_cjac_4184,
Dasypus novemcinctus ENSDNOG00000001174 ortholog_one2one 2 retrogenes
retro_dnov_1982, retro_dnov_989,
Equus caballus ENSECAG00000021928 ortholog_one2one 1 retrogene
retro_ecab_361,
Homo sapiens ENSG00000119318 ortholog_one2one 2 retrogenes
retro_hsap_2611, retro_hsap_3754,
Gorilla gorilla ENSGGOG00000002511 ortholog_one2one 1 retrogene
retro_ggor_1829,
Loxodonta africana ENSLAFG00000007533 ortholog_one2one 1 retrogene
retro_lafr_1109,
Macaca mulatta ENSMMUG00000014944 ortholog_one2one 2 retrogenes
retro_mmul_1476, retro_mmul_1725,
Nomascus leucogenys ENSNLEG00000017319 ortholog_one2one 1 retrogene
retro_nleu_1590,
Oryctolagus cuniculus ENSOCUG00000007316 ortholog_one2many 1 retrogene
retro_ocun_1429,
Otolemur garnettii ENSOGAG00000014216 ortholog_one2one 1 retrogene
retro_ogar_3040,
Pongo abelii ENSPPYG00000019477 ortholog_one2one 2 retrogenes
retro_pabe_2344, retro_pabe_3162,
Pan troglodytes ENSPTRG00000021229 ortholog_one2one 1 retrogene
retro_ptro_1760,
Sarcophilus harrisii ENSSHAG00000011925 ortholog_one2many 1 retrogene
retro_shar_248,
Sus scrofa ENSSSCG00000005436 ortholog_one2one 1 retrogene
retro_sscr_770,
Tursiops truncatus ENSTTRG00000007597 ortholog_one2one 1 retrogene
retro_ttru_1401,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_877 95.35 100.00
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Download FASTA sequences of all ENSBTAG00000001926 retrocopies