Parental gene:

PPDPF, ENSSHAG00000018338

Aliases:None
Description:pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) [Source:HGNC Symbol;Acc:16142]
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL834659.1:3486857..3495106(-)


>ENSSHAG00000018338
ATGACGGATACCTTCTCCCTCCCCACCCCACATCCCCGCCTCTTCTCGCCACCCTATATAAGTCTTTGCTCGGCCCCTGT
AGAATCAAACCCAAAGAACTCTCGCATTTTTTGTTGCCGTGGAGTATCCTCCCGTTATCTCCTTTACAAATGGGCTCTGT
GGCCTAGCGCACTCTTCCCCCGAGCCAGGTCACCCGTGATCGTCCGCCGCAGTCCACTGCCTGACAGGGGCTGCTCGGGA
GCCGCCACTAAGGTTTACATCATCACAAGGAAAAGAACAAGCAACATGGCAGCAATCCCGTCCAGCGGTTCACTCGTAGC
AACCCACGATTACTACCGAAGACGTCTGGGTTCCACTTCCAGCAACAGCTCCTGTGGAAGTGCTGAGTACTCTGGGGAAG
TGATCCCCCACCATCCTGGTCTTCCTAAATCAGATCCAGGCCATTGGTGGGCAAGCTTCTTCTTCGGGAAATCAAGTCAT
CCTTTCATGACAACTGTATTGGAATCCCCAGAGCACTCAGGAACTTTCCAGGTTGCTCATGGCACGATCACCTGTGACCT
GGCTCAGGAGGCCATGAGGAAGCGGCATGTCAGCGAGCCCAGCAAAACCAGCCCTGGGACTTCTGCATGA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000031800 ortholog_one2many 7 retrogenes
retro_btau_1339, retro_btau_1538, retro_btau_1606, retro_btau_1817, retro_btau_1857, retro_btau_385, retro_btau_54,
Equus caballus ENSECAG00000009413 ortholog_one2one 1 retrogene
retro_ecab_477,
Felis catus ENSFCAG00000024386 ortholog_one2many 14 retrogenes
retro_fcat_1018, retro_fcat_1061, retro_fcat_128, retro_fcat_1293, retro_fcat_1581, retro_fcat_1669, retro_fcat_1685, retro_fcat_194, retro_fcat_308, retro_fcat_325, retro_fcat_355, retro_fcat_440, retro_fcat_711, retro_fcat_789,
Homo sapiens ENSG00000125534 ortholog_one2one 1 retrogene
retro_hsap_3205,
Latimeria chalumnae ENSLACG00000002835 ortholog_one2one 1 retrogene
retro_lcha_69,
Loxodonta africana ENSLAFG00000026496 ortholog_one2many 2 retrogenes
retro_lafr_1082, retro_lafr_251,
Macaca mulatta ENSMMUG00000006064 ortholog_one2many 2 retrogenes
retro_mmul_2020, retro_mmul_41,
Monodelphis domestica ENSMODG00000016871 ortholog_one2many 2 retrogenes
retro_mdom_1325, retro_mdom_222,
Mustela putorius furo ENSMPUG00000008301 ortholog_one2one 12 retrogenes
retro_mputfur_1039, retro_mputfur_1097, retro_mputfur_1247, retro_mputfur_1282, retro_mputfur_1312, retro_mputfur_1327, retro_mputfur_1355, retro_mputfur_347, retro_mputfur_526, retro_mputfur_665, retro_mputfur_788, retro_mputfur_928,
Mus musculus ENSMUSG00000016344 ortholog_one2one 3 retrogenes
retro_mmus_1224, retro_mmus_658, retro_mmus_815,
Nomascus leucogenys ENSNLEG00000010068 ortholog_one2one 3 retrogenes
retro_nleu_1154, retro_nleu_1270, retro_nleu_1339,
Otolemur garnettii ENSOGAG00000008810 ortholog_one2one 2 retrogenes
retro_ogar_1797, retro_ogar_1912,
Pan troglodytes ENSPTRG00000013739 ortholog_one2one 1 retrogene
retro_ptro_2243,
Rattus norvegicus ENSRNOG00000012722 ortholog_one2one 1 retrogene
retro_rnor_752,
Ictidomys tridecemlineatus ENSSTOG00000007808 ortholog_one2one 1 retrogene
retro_itri_1363,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_shar_637 76.42 50.72
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2. retro_shar_640 64.74 82.78
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3. retro_shar_733 66.40 59.33
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Download FASTA sequences of all ENSSHAG00000018338 retrocopies