RetrogeneDB ID: retro_mputfur_788

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896947.1:11241367..11241640(-)
• Located in intron of: ENSMPUG00000002947

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PPDPF
• Ensembl ID: ENSMPUG00000008301
• Aliases: None
• Description: pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) [Source:HGNC Symbol;Acc:16142]

Sequence

>retro_mputfur_788
GGGGCTTCACTTCCTAACAGCGCCTGTGGAAGTGCTGAGTATCCTGGGGAAGCCATCCCTCGCCACCCAGGTTTCCCCAA
GGCCGGCCCGCTCACTGGTGGGCAAGCTGCTTTTTTGGGAAGTCTACTCTCCCGTGCATGGCTATAGGGTTTGAGTCCCC
AGAAATCTCTGACTCTGCCCAGGCCTCCAGCAGAACGCTCACCTGTGAACTTGGCTCTGGAAGCCAGGAGGAAGCGGCCT
AGCGGCCAGCCTGGTAAAGCCAACACAGAGCCC

Alignment

ORF - retro_mputfur_788 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.22 %
• Parental protein coverage: 79.82 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GSTSSSSSCGSAECAGEAIPHPPGLPKADP-GHWWASFFFGKSTVPFMATVLESPERSEPPQASSGTITS
          G.....S.CGSAE..GEAIP..PG.PKA.P..HWWAS.FFGKST.P.MA...ESPE.S...QASS.T.T.
Retrocopy GASLPNSACGSAEYPGEAIPRHPGFPKAGP<AHWWASCFFGKSTLPCMAIGFESPEISDSAQASSRTLTC

Parental  D-PAPEAVRKQPGGRPGKANVGP
          ...A.EA.RK.P.G.PGKAN..P
Retrocopy E>LALEARRKRPSGQPGKANTEP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_788 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_788 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 16 parental genes, and 56 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000031800	7 retrocopies	retro_btau_1339, retro_btau_1538, retro_btau_1606, retro_btau_1817, retro_btau_1857, retro_btau_385, retro_btau_54,
Equus caballus	ENSECAG00000009413	1 retrocopy	retro_ecab_477,
Felis catus	ENSFCAG00000024386	14 retrocopies	retro_fcat_1018, retro_fcat_1061, retro_fcat_128, retro_fcat_1293, retro_fcat_1581, retro_fcat_1669, retro_fcat_1685, retro_fcat_194, retro_fcat_308, retro_fcat_325, retro_fcat_355, retro_fcat_440, retro_fcat_711, retro_fcat_789,
Homo sapiens	ENSG00000125534	1 retrocopy