Parental gene:

SUB1, ENSRNOG00000050563

Aliases:Sub1, Rpo2tc1
Description:Activated RNA polymerase II transcriptional coactivator p15 [Source:UniProtKB/Swiss-Prot;Acc:Q63396]
Organism:Rat (Rattus norvegicus)
Coordinates:2:82656090..82670880(+)


>ENSRNOG00000050563
ATGCCTAAATCAAAGGAACTTGTTTCTTCGAGCTCTTCAGGCAGTGATTCTGACAGCGAAGTTGAAAAAAAGTTAAAGAG
GAAAAAGCAAGTTGTTCCAGAGAAACCTGTGAAGAAGCAAAAGCCTGGTGAGAGTTCTAGAGCACTGGCATCCTCCAAGC
AGAGTAGCAGCAGCAGAGATGATAACATGTTCCAGATTGGAAAGATGAGATATGTCAGTGTTCGGGACTTTAAAGGAAAA
ATTCTAATTGATATTAGAGAATATTGGATGGACTCAGAAGGTGAAATGAAACCAGGGAGAAAAGGTATTTCTTTAAACAT
GGAACAATGGAGCCAGCTGAAGGAACAGATCTCTGACATAGATGACGCAGTAAGAAAGCTGTAA

Library Parental gene expression (RPM)
SRP017611_liver 35 .90 RPM
SRP017611_kidney 67 .90 RPM
SRP017611_brain 249 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006238 ortholog_one2one 2 retrogenes
retro_amel_1331, retro_amel_794,
Canis familiaris ENSCAFG00000018879 ortholog_one2many 5 retrogenes
retro_cfam_1266, retro_cfam_1536, retro_cfam_1916, retro_cfam_2010, retro_cfam_215,
Callithrix jacchus ENSCJAG00000018718 ortholog_one2one 2 retrogenes
retro_cjac_1908, retro_cjac_484,
Cavia porcellus ENSCPOG00000005584 ortholog_one2one 4 retrogenes
retro_cpor_1114, retro_cpor_1481, retro_cpor_834, retro_cpor_854,
Dasypus novemcinctus ENSDNOG00000007611 ortholog_one2one 5 retrogenes
retro_dnov_1230, retro_dnov_161, retro_dnov_1822, retro_dnov_2156, retro_dnov_400,
Dipodomys ordii ENSDORG00000013916 ortholog_one2one 2 retrogenes
retro_dord_85, retro_dord_98,
Felis catus ENSFCAG00000006012 ortholog_one2one 2 retrogenes
retro_fcat_1052, retro_fcat_1313,
Homo sapiens ENSG00000113387 ortholog_one2one 2 retrogenes
retro_hsap_1662, retro_hsap_3934,
Gorilla gorilla ENSGGOG00000027033 ortholog_one2one 3 retrogenes
retro_ggor_1063, retro_ggor_1254, retro_ggor_2645,
Loxodonta africana ENSLAFG00000011006 ortholog_one2many 1 retrogene
retro_lafr_19,
Macropus eugenii ENSMEUG00000007770 ortholog_one2one 4 retrogenes
retro_meug_1155, retro_meug_1820, retro_meug_2038, retro_meug_500,
Microcebus murinus ENSMICG00000014535 ortholog_one2many 2 retrogenes
retro_mmur_1115, retro_mmur_17,
Myotis lucifugus ENSMLUG00000013685 ortholog_one2many 6 retrogenes
retro_mluc_1649, retro_mluc_1696, retro_mluc_1785, retro_mluc_226, retro_mluc_2346, retro_mluc_621,
Macaca mulatta ENSMMUG00000011470 ortholog_one2one 2 retrogenes
retro_mmul_2318, retro_mmul_993,
Monodelphis domestica ENSMODG00000020410 ortholog_one2one 3 retrogenes
retro_mdom_840, retro_mdom_841, retro_mdom_895,
Mustela putorius furo ENSMPUG00000015185 ortholog_one2many 2 retrogenes
retro_mputfur_186, retro_mputfur_295,
Mus musculus ENSMUSG00000022205 ortholog_one2one 4 retrogenes
retro_mmus_1118, retro_mmus_2304, retro_mmus_2586, retro_mmus_3606,
Oryctolagus cuniculus ENSOCUG00000006262 ortholog_one2many 5 retrogenes
retro_ocun_1227, retro_ocun_1313, retro_ocun_1661, retro_ocun_1714, retro_ocun_902,
Otolemur garnettii ENSOGAG00000009012 ortholog_one2many 6 retrogenes
retro_ogar_1130, retro_ogar_1272, retro_ogar_218, retro_ogar_2481, retro_ogar_340, retro_ogar_525,
Ochotona princeps ENSOPRG00000012887 ortholog_one2one 2 retrogenes
retro_opri_495, retro_opri_941,
Pongo abelii ENSPPYG00000015379 ortholog_one2many 2 retrogenes
retro_pabe_124, retro_pabe_1371,
Sarcophilus harrisii ENSSHAG00000014986 ortholog_one2one 1 retrogene
retro_shar_628,
Ictidomys tridecemlineatus ENSSTOG00000019364 ortholog_one2one 2 retrogenes
retro_itri_570, retro_itri_571,
Tarsius syrichta ENSTSYG00000014069 ortholog_one2one 2 retrogenes
retro_tsyr_528, retro_tsyr_895,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_420 71.54 100.00
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2. retro_rnor_572 76.09 70.87
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3. retro_rnor_735 74.17 92.91
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4. retro_rnor_1040 62.50 61.42
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5. retro_rnor_1137 85.94 99.21
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6. retro_rnor_1203 75.97 99.21
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7. retro_rnor_1496 85.16 100.00
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8. retro_rnor_1692 87.50 99.21
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9. retro_rnor_1693 87.50 99.21
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10. retro_rnor_1863 80.47 100.00
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11. retro_rnor_2721 72.82 80.31
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12. retro_rnor_2986 80.58 79.53
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Download FASTA sequences of all ENSRNOG00000050563 retrocopies