Parental gene:

Rpl23a, ENSRNOG00000023344

Aliases:None
Description:60S ribosomal protein L23a [Source:UniProtKB/Swiss-Prot;Acc:P62752]
Organism:Rat (Rattus norvegicus)
Coordinates:10:66190635..66193322(+)


>ENSRNOG00000023344
ATGGCGCCGAAAGCGAAGAAGGAAGCTCCTGCCCCTCCCAAAGCCGAAGCCAAAGCGAAGGCCTTGAAAGCTAAGAAGGC
AGTGCTGAAAGGTGTCCACAGTCACAAAAAGAAGAAGATCCGAACGTCACCCACTTTCCGGCGGCCCAAGACCCTGCGGC
TCCGGAGGCAGCCAAAATATCCTCGAAAGAGTGCACCCAGGAGAAACAAGCTTGACCACTATGCTATCATCAAATTCCCA
CTGACCACCGAGTCAGCTATGAAGAAAATAGAGGACAACAACACGCTTGTGTTCATTGTGGATGTTAAGGCCAACAAGCA
CCAGATCAAACAGGCCGTGAAAAAACTCTATGATATAGATGTGGCCAAAGTCAATACTCTGATACGGCCTGACGGAGAGA
AGAAGGCATATGTTCGCTTGGCTCCTGATTATGATGCTCTAGATGTTGCCAACAAGATTGGGATCATCTAA

Library Parental gene expression (RPM)
SRP017611_liver 57 .56 RPM
SRP017611_kidney 96 .02 RPM
SRP017611_brain 77 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000005311 possible_ortholog 2 retrogenes
Bos taurus ENSBTAG00000046394 possible_ortholog 6 retrogenes
Callithrix jacchus ENSCJAG00000013126 ortholog_one2one 7 retrogenes
Dasypus novemcinctus ENSDNOG00000019487 possible_ortholog 65 retrogenes
Felis catus ENSFCAG00000004021 ortholog_one2one 35 retrogenes
Homo sapiens ENSG00000198242 ortholog_one2one 57 retrogenes
Gorilla gorilla ENSGGOG00000016736 possible_ortholog 26 retrogenes
Loxodonta africana ENSLAFG00000013387 possible_ortholog 16 retrogenes
Myotis lucifugus ENSMLUG00000012448 possible_ortholog 4 retrogenes
Monodelphis domestica ENSMODG00000019297 possible_ortholog 3 retrogenes
Mustela putorius furo ENSMPUG00000014179 ortholog_one2many 12 retrogenes
Mus musculus ENSMUSG00000058546 possible_ortholog 8 retrogenes
Nomascus leucogenys ENSNLEG00000002872 possible_ortholog 60 retrogenes
Procavia capensis ENSPCAG00000017002 possible_ortholog 30 retrogenes
Pongo abelii ENSPPYG00000008108 ortholog_one2one 49 retrogenes
Pteropus vampyrus ENSPVAG00000002922 possible_ortholog 32 retrogenes
Sarcophilus harrisii ENSSHAG00000014549 possible_ortholog 13 retrogenes
Sus scrofa ENSSSCG00000017768 possible_ortholog 9 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000011328 ortholog_one2one 23 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_40 98.72 100.00
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2. retro_rnor_62 96.15 100.00
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3. retro_rnor_136 85.53 97.44
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4. retro_rnor_145 90.38 100.00
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5. retro_rnor_211 99.36 100.00
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6. retro_rnor_404 91.03 100.00
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Download FASTA sequences of all ENSRNOG00000023344 retrocopies