Parental gene:

Mrto4, ENSRNOG00000017979

Aliases:Mrto4, RGD1311709
Description:mRNA turnover protein 4 homolog [Source:RefSeq peptide;Acc:NP_001100167]
Organism:Rat (Rattus norvegicus)
Coordinates:5:161555066..161560580(-)


>ENSRNOG00000017979
ATGAGGAACAGCAAGCTGAAGGACATCCGGAATGCCTGGAAGCACAGCCGGATGTTCTTTGGCAAAAACAAGGTGATGAT
GGTGGCCTTGGGTCGAAGCCCGTCTGATGAATACAAAGACAACCTACATCAGGTCAGCAAGAAGTTGAGAGGTGAAGTTG
GGCTCCTTTTTACCAACCGCACGAAGGAGGAGGTGAATGAGTGGTTCACAAAGTATACAGAAATGGATTTTGCTCGAGCG
GGGAACAAAGCAACTTTAACTGTGAGCCTGGATCCAGGGCCGCTGAAACAGTTCCCTCATTCCATGGAGCCACAGCTGAG
GCAGCTGGGTCTGCCCACTGCCCTCAAGAAAGGTGTGGTGACCTTGCTGTCTGACTATGAAGTGTGCAAGGAGGGTGACG
TGCTGACCCCAGAGCAGGCCCGTGTCCTGAAGCTGTTTGGGTATGAGATGGCCGAATTCAAAGTGACCATCAAATACATG
TGGGATGCCCAGTCAGGGAGATTCCAGCAGATGGACGATGACCTTCCCGAGAGCGCGCCTGAGTCTGAGGGGGAGTCTGA
GGAGGAGGAGGACGACAGCTGA

Library Parental gene expression (RPM)
SRP017611_liver 8 .81 RPM
SRP017611_kidney 12 .35 RPM
SRP017611_brain 10 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000015189 ortholog_many2many 1 retrogene
retro_cfam_1353,
Callithrix jacchus ENSCJAG00000006812 ortholog_one2many 3 retrogenes
retro_cjac_1146, retro_cjac_1834, retro_cjac_3791,
Dasypus novemcinctus ENSDNOG00000010119 ortholog_one2many 6 retrogenes
retro_dnov_1051, retro_dnov_1545, retro_dnov_170, retro_dnov_1890, retro_dnov_2044, retro_dnov_2255,
Echinops telfairi ENSETEG00000001675 ortholog_one2many 5 retrogenes
retro_etel_1080, retro_etel_1162, retro_etel_1172, retro_etel_1887, retro_etel_2177,
Homo sapiens ENSG00000053372 ortholog_one2many 2 retrogenes
retro_hsap_1766, retro_hsap_1914,
Gorilla gorilla ENSGGOG00000000533 ortholog_one2many 2 retrogenes
retro_ggor_1400, retro_ggor_2244,
Macropus eugenii ENSMEUG00000000027 ortholog_one2many 1 retrogene
retro_meug_1606,
Microcebus murinus ENSMICG00000004019 ortholog_one2many 2 retrogenes
retro_mmur_1235, retro_mmur_733,
Myotis lucifugus ENSMLUG00000001566 ortholog_many2many 1 retrogene
retro_mluc_374,
Macaca mulatta ENSMMUG00000006695 ortholog_many2many 1 retrogene
retro_mmul_107,
Monodelphis domestica ENSMODG00000015874 ortholog_one2many 1 retrogene
retro_mdom_1694,
Mustela putorius furo ENSMPUG00000016181 ortholog_many2many 2 retrogenes
retro_mputfur_1177, retro_mputfur_1430,
Mus musculus ENSMUSG00000028741 ortholog_one2many 2 retrogenes
retro_mmus_852, retro_mmus_924,
Oryctolagus cuniculus ENSOCUG00000000274 ortholog_one2many 2 retrogenes
retro_ocun_1191, retro_ocun_951,
Otolemur garnettii ENSOGAG00000010713 ortholog_many2many 2 retrogenes
retro_ogar_1826, retro_ogar_2060,
Pongo abelii ENSPPYG00000001795 ortholog_one2many 2 retrogenes
retro_pabe_1535, retro_pabe_1548,
Pan troglodytes ENSPTRG00000000262 ortholog_one2many 2 retrogenes
retro_ptro_1182, retro_ptro_1248,
Ictidomys tridecemlineatus ENSSTOG00000028112 ortholog_one2many 1 retrogene
retro_itri_1551,
Tupaia belangeri ENSTBEG00000006502 ortholog_one2many 8 retrogenes
retro_tbel_1020, retro_tbel_1189, retro_tbel_1210, retro_tbel_1873, retro_tbel_1945, retro_tbel_2665, retro_tbel_394, retro_tbel_559,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2967 80.58 72.02
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Download FASTA sequences of all ENSRNOG00000017979 retrocopies