Parental gene:

MRTO4, ENSCJAG00000006812

Aliases:None
Description:mRNA turnover 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:18477]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:53265612..53273426(+)


>ENSCJAG00000006812
ATGCCCAAATCCAAACGCGACAAGAAAGTCTCCTTAACCAAAACTGCCAAGAAGGGCTTGGAATTGAAACAAAACCTGAT
AGAAGAGCTTCGGAAATGTGTGGACACTTACAAGTACCTTTTCATCTTCTCTGTGGCCAACATGAGAAATAGCAAGCTGA
AGGACATCCGGAACGCCTGGAAGCACAGCCGGATGTTCTTTGGCAAAAACAAGGTAATGATGGTGGCCTTGGGTCGGAGC
CCATCTGATGAGTACAAAGACAACCTGCACCAGGTCAGCAAAAAGTTGAGGGGTGAAGTGGGTCTCCTGTTCACCAACCG
CACAAAGGAGGAGGTGAATGAATGGTTCACGAAATACACAGAAATGGACTATGCCCGAGCTGGTAACAAAGCAACTTTCA
CTGTGAGCTTGGACTCAGGGCCCCTGGAGCAGTTCCCCCACTCCATGGAGCCACAGCTGAGGCAGCTGGGCCTGCCCACC
ACCCTCAAAAGAGGTGTGGTGACCCTGCTGTCCGACTACGAGGTGTGCAAGGAGGGTGACGTGCTGACCCCAGAGCAGGC
TCGCGTCCTGAAGCTTTTTGGGTATGAGATGGCTGAATTCAAGGTGACCATCAAATACATGTGGGACTCACAGTCGGGAA
GGTTCCAGCAGATGGGAGATGACTTGCCAGAGAGCGCATCCGAGTCTGCAGAAGACTCAGAGTTAGAAGACAGTGACTGA

Library Parental gene expression (RPM)
SRP051959_spleen 6 .53 RPM
SRP051959_skeletal_muscle 14 .28 RPM
SRP051959_lymph_node 7 .33 RPM
SRP051959_lung 6 .02 RPM
SRP051959_liver 14 .47 RPM
SRP051959_kidney 9 .50 RPM
SRP051959_heart 6 .88 RPM
SRP051959_colon 6 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000015189 ortholog_one2many 1 retrogene
retro_cfam_1353,
Dasypus novemcinctus ENSDNOG00000010119 ortholog_one2one 6 retrogenes
retro_dnov_1051, retro_dnov_1545, retro_dnov_170, retro_dnov_1890, retro_dnov_2044, retro_dnov_2255,
Echinops telfairi ENSETEG00000001675 ortholog_one2one 5 retrogenes
retro_etel_1080, retro_etel_1162, retro_etel_1172, retro_etel_1887, retro_etel_2177,
Homo sapiens ENSG00000053372 ortholog_one2one 2 retrogenes
retro_hsap_1766, retro_hsap_1914,
Gorilla gorilla ENSGGOG00000000533 ortholog_one2one 2 retrogenes
retro_ggor_1400, retro_ggor_2244,
Macropus eugenii ENSMEUG00000000027 ortholog_one2one 1 retrogene
retro_meug_1606,
Microcebus murinus ENSMICG00000004019 ortholog_one2one 2 retrogenes
retro_mmur_1235, retro_mmur_733,
Myotis lucifugus ENSMLUG00000001566 ortholog_one2many 1 retrogene
retro_mluc_374,
Macaca mulatta ENSMMUG00000006695 ortholog_one2many 1 retrogene
retro_mmul_107,
Monodelphis domestica ENSMODG00000015874 ortholog_one2one 1 retrogene
retro_mdom_1694,
Mustela putorius furo ENSMPUG00000016181 ortholog_one2many 2 retrogenes
retro_mputfur_1177, retro_mputfur_1430,
Mus musculus ENSMUSG00000028741 ortholog_one2one 2 retrogenes
retro_mmus_852, retro_mmus_924,
Oryctolagus cuniculus ENSOCUG00000000274 ortholog_one2one 2 retrogenes
retro_ocun_1191, retro_ocun_951,
Otolemur garnettii ENSOGAG00000010713 ortholog_one2many 2 retrogenes
retro_ogar_1826, retro_ogar_2060,
Pongo abelii ENSPPYG00000001795 ortholog_one2one 2 retrogenes
retro_pabe_1535, retro_pabe_1548,
Pan troglodytes ENSPTRG00000000262 ortholog_one2one 2 retrogenes
retro_ptro_1182, retro_ptro_1248,
Rattus norvegicus ENSRNOG00000017979 ortholog_one2many 1 retrogene
retro_rnor_2967,
Ictidomys tridecemlineatus ENSSTOG00000028112 ortholog_one2one 1 retrogene
retro_itri_1551,
Tupaia belangeri ENSTBEG00000006502 ortholog_one2one 8 retrogenes
retro_tbel_1020, retro_tbel_1189, retro_tbel_1210, retro_tbel_1873, retro_tbel_1945, retro_tbel_2665, retro_tbel_394, retro_tbel_559,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1146 60.54 91.63
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2. retro_cjac_1834 98.75 100.00
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3. retro_cjac_3791 82.39 65.69
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Download FASTA sequences of all ENSCJAG00000006812 retrocopies