Parental gene: | Hdac1, ENSRNOG00000009568 |
| Aliases: | None |
| Description: | Histone deacetylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q4QQW4] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 5:151445685..151472652(-) |
>ENSRNOG00000009568
ATGGCGCAGACTCAGGGCACCAAGAGGAAAGTCTGTTACTACTACGACGGGGATGTTGGAAACTACTATTATGGACAAGG
GCACCCAATGAAGCCTCACCGAATCCGAATGACTCATAATTTGCTGCTCAACTATGGTCTCTACCGAAAAATGGAAATCT
ATCGTCCTCACAAAGCCAACGCTGAGGAGATGACCAAGTACCACAGCGACGACTACATCAAGTTCTTGCGTTCTATTCGC
CCAGACAATATGTCTGAATACAGCAAGCAGATGCAGAGATTCAACGTGGGTGAGGACTGTCCGGTATTTGATGGCTTGTT
TGAGTTCTGTCAGTTGTCCACGGGTGGCTCTGTCGCGAGTGCTGTGAAACTCAATAAGCAGCAGACGGACATCGCTGTGA
ACTGGGCTGGGGGCCTGCACCATGCGAAGAAGTCTGAAGCATCCGGCTTCTGTTACGTCAATGATATTGTCTTGGCCATC
CTGGAACTGCTAAAGTATCACCAGAGGGTGCTGTATATTGACATTGACATTCACCATGGCGATGGCGTGGAAGAGGCCTT
CTATACCACAGACCGGGTCATGACTGTGTCCTTTCATAAATACGGAGAGTACTTCCCAGGAACTGGGGACCTACGGGATA
TTGGGGCTGGCAAAGGCAAGTACTACGCCGTTAACTACCCACTGCGAGATGGCATTGATGATGAGTCCTATGAAGCCATC
TTTAAGCCAGTCATGTCCAAAGTAATGGAGATGTTCCAGCCTAGTGCAGTGGTCCTACAGTGCGGCTCAGACTCCCTGTC
TGGGGATCGGCTAGGTTGCTTCAATCTGACCATCAAAGGACATGCCAAGTGTGTGGAGTTCGTGAAGAGTTTCAACTTGC
CGATGCTAATGTTGGGAGGAGGTGGCTATACCATCCGTAATGTCGCTCGGTGCTGGACTTACGAGACAGCTGTGGCCCTG
GACACAGAGATCCCTAATGAGCTACCATACAATGACTACTTTGAATACTTTGGACCAGATTTCAAGCTTCACATCAGCCC
TTCCAATATGACTAACCAGAACACTAATGAATACCTGGAGAAGATCAAGCAGCGGCTCTTTGAGAACTTGAGAATGCTGC
CCCATGCCCCTGGGGTCCAAATGCAGGCCATCCCAGAGGATGCCATCCCAGAAGAGAGCGGTGATGAGGATGAGGAAGAC
CCTGACAAACGAATTTCCATCTGCTCCTCTGACAAACGCATTGCCTGTGAGGAGGAATTCTCTGATTCTGATGAGGAGGG
AGAAGGAGGTCGCAAGAACTCTTCTAACTTCAAAAAAGCCAAAAGAGTCAAAACAGAAGATGAAAAAGAAAAAGATCCCG
AGGAGAAAAAAGAAGTCACAGAAGAGGAGAAAACCAAGGAGGAGAAGCCAGAAGCCAAAGGGGTCAAAGAAGAGGTCAAG
ATGGCCTGA
ATGGCGCAGACTCAGGGCACCAAGAGGAAAGTCTGTTACTACTACGACGGGGATGTTGGAAACTACTATTATGGACAAGG
GCACCCAATGAAGCCTCACCGAATCCGAATGACTCATAATTTGCTGCTCAACTATGGTCTCTACCGAAAAATGGAAATCT
ATCGTCCTCACAAAGCCAACGCTGAGGAGATGACCAAGTACCACAGCGACGACTACATCAAGTTCTTGCGTTCTATTCGC
CCAGACAATATGTCTGAATACAGCAAGCAGATGCAGAGATTCAACGTGGGTGAGGACTGTCCGGTATTTGATGGCTTGTT
TGAGTTCTGTCAGTTGTCCACGGGTGGCTCTGTCGCGAGTGCTGTGAAACTCAATAAGCAGCAGACGGACATCGCTGTGA
ACTGGGCTGGGGGCCTGCACCATGCGAAGAAGTCTGAAGCATCCGGCTTCTGTTACGTCAATGATATTGTCTTGGCCATC
CTGGAACTGCTAAAGTATCACCAGAGGGTGCTGTATATTGACATTGACATTCACCATGGCGATGGCGTGGAAGAGGCCTT
CTATACCACAGACCGGGTCATGACTGTGTCCTTTCATAAATACGGAGAGTACTTCCCAGGAACTGGGGACCTACGGGATA
TTGGGGCTGGCAAAGGCAAGTACTACGCCGTTAACTACCCACTGCGAGATGGCATTGATGATGAGTCCTATGAAGCCATC
TTTAAGCCAGTCATGTCCAAAGTAATGGAGATGTTCCAGCCTAGTGCAGTGGTCCTACAGTGCGGCTCAGACTCCCTGTC
TGGGGATCGGCTAGGTTGCTTCAATCTGACCATCAAAGGACATGCCAAGTGTGTGGAGTTCGTGAAGAGTTTCAACTTGC
CGATGCTAATGTTGGGAGGAGGTGGCTATACCATCCGTAATGTCGCTCGGTGCTGGACTTACGAGACAGCTGTGGCCCTG
GACACAGAGATCCCTAATGAGCTACCATACAATGACTACTTTGAATACTTTGGACCAGATTTCAAGCTTCACATCAGCCC
TTCCAATATGACTAACCAGAACACTAATGAATACCTGGAGAAGATCAAGCAGCGGCTCTTTGAGAACTTGAGAATGCTGC
CCCATGCCCCTGGGGTCCAAATGCAGGCCATCCCAGAGGATGCCATCCCAGAAGAGAGCGGTGATGAGGATGAGGAAGAC
CCTGACAAACGAATTTCCATCTGCTCCTCTGACAAACGCATTGCCTGTGAGGAGGAATTCTCTGATTCTGATGAGGAGGG
AGAAGGAGGTCGCAAGAACTCTTCTAACTTCAAAAAAGCCAAAAGAGTCAAAACAGAAGATGAAAAAGAAAAAGATCCCG
AGGAGAAAAAAGAAGTCACAGAAGAGGAGAAAACCAAGGAGGAGAAGCCAGAAGCCAAAGGGGTCAAAGAAGAGGTCAAG
ATGGCCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 19 .90 RPM |
| SRP017611_kidney | 40 .26 RPM |
| SRP017611_brain | 16 .90 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ciona intestinalis | ENSCING00000002649 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000000970 | possible_ortholog | 2 retrogenes | |
| Homo sapiens | ENSG00000116478 | possible_ortholog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000011741 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000013837 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000009948 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000028800 | ortholog_many2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000002473 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000005709 | ortholog_one2many | 3 retrogenes | |
| Pelodiscus sinensis | ENSPSIG00000004134 | ortholog_one2many | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000013325 | possible_ortholog | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000008787 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_1091 | 81.97 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_1098 | 90.56 | 80.71 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_2457 | 78.89 | 92.32 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000009568 retrocopies