Parental gene:

HDAC1, ENSGGOG00000011741

Aliases:None
Description:Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:G3R7V7]
Organism:Gorilla (Gorilla gorilla)
Coordinates:1:33381790..33423251(+)


>ENSGGOG00000011741
ATGGCGCAGACGCAGGGCACCCGGAGGAAAGTCTGTTACTACTACGACGGGGATGTTGGAAATTACTATTATGGACAAGG
CCACCCAATGAAGCCTCACCGAATCCGCATGACTCATAATTTGCTGCTCAACTATGGTCTCTACCGAAAAATGGAAATCT
ATCGCCCTCACAAAGCCAATGCTGAGGAGATGACCAAGTACCACAGCGATGACTACATTAAATTCTTGCGCTCCATCCGT
CCAGATAACATGTCGGAGTACAGCAAGCAGATGCAGAGATTCAACGTTGGTGAGGACTGTCCAGTATTCGATGGCCTGTT
TGAGTTCTGTCAGTTGTCTACTGGTGGTTCTGTGGCAAGTGCTGTGAAACTTAATAAGCAGCAGACGGACATCGCTGTGA
ATTGGGCTGGGGGCCTGCACCATGCAAAGAAGTCCGAGGCATCTGGCTTCTGTTACGTCAATGATATCGTCTTGGCCATC
CTGGAACTGCTAAAGTATCACCAGAGGGTGCTGTATATTGACATTGATATTCACCATGGCGACGGCGTGGAAGAGGCCTT
CTATACCACGGACCGGGTCATGACTGTGTCCTTTCATAAGTATGGAGAGTACTTCCCAGGAACTGGGGACCTACGGGATA
TCGGGGCTGGCAAAGGCAAGTATTATGCTGTTAACTACCCGCTCCGAGACGGGATTGATGACGAGTCCTATGAGGCCATT
TTCAAGCCGGTCATGTCCAAAGTAATGGAGATGTTCCAGCCTAGTGCGGTGGTCTTACAGTGTGGCTCAGACTCCCTATC
TGGGGATCGGTTAGGTTGCTTCAATCTAACTATCAAAGGGCACGCCAAGTGTGTGGAATTTGTCAAGAGCTTTAACCTGC
CTATGCTGATGCTGGGAGGCGGTGGTTACACCATTCGTAATGTTGCCCGGTGCTGGACATACGAGACAGCTGTGGCCCTG
GATACAGAGATCCCTAATGAGCTTCCATACAACGACTACTTTGAATACTTTGGACCAGATTTCAAGCTCCACATCAGTCC
TTCCAATATGACTAACCAGAACACCAATGAGTACCTGGAGAAGATCAAACAGCGACTGTTTGAGAACCTTAGAATGCTGC
CGCACGCACCTGGGGTCCAAATGCAGGCGATTCCTGAGGACGCCATCCCTGAGGAGAGTGGCGATGAGGACGAAGAAGAC
CCTGAGAAGCGCATCTCGATCTGCTCCTCTGACAAACGAATTGCCTGTGAGGAAGAGTTCTCCGATTCTGAAGAGGAGGG
AGAGGGGGGCCGCAAGAACTCTTCCAACTTCAAAAAAGCCAAGAGGGTCAAAACAGAGGATGAAAAAGAGAAAGACCCAG
AGGAGAAGAAAGAAGTCACTGAAGAGGAGAAAACCAAGGAGGAGAAGCCAGAAGCCAAAGGGGTCAAGGAGGAGGTCAAG
TTGGCCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 19 .76 RPM
SRP007412_cerebellum 12 .41 RPM
SRP007412_heart 20 .58 RPM
SRP007412_kidney 64 .69 RPM
SRP007412_liver 68 .16 RPM
SRP007412_testis 107 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000002649 ortholog_one2many 1 retrogene
retro_cint_18,
Callithrix jacchus ENSCJAG00000000970 ortholog_one2one 2 retrogenes
retro_cjac_2490, retro_cjac_830,
Homo sapiens ENSG00000116478 ortholog_one2one 1 retrogene
retro_hsap_826,
Myotis lucifugus ENSMLUG00000013837 ortholog_one2many 1 retrogene
retro_mluc_283,
Macaca mulatta ENSMMUG00000009948 ortholog_one2one 2 retrogenes
retro_mmul_1085, retro_mmul_2518,
Mus musculus ENSMUSG00000028800 possible_ortholog 1 retrogene
retro_mmus_153,
Nomascus leucogenys ENSNLEG00000002473 ortholog_one2one 1 retrogene
retro_nleu_259,
Pelodiscus sinensis ENSPSIG00000004134 ortholog_one2one 1 retrogene
retro_psin_44,
Pteropus vampyrus ENSPVAG00000013325 ortholog_one2one 1 retrogene
retro_pvam_1339,
Rattus norvegicus ENSRNOG00000009568 possible_ortholog 3 retrogenes
retro_rnor_1091, retro_rnor_1098, retro_rnor_2457,
Sarcophilus harrisii ENSSHAG00000008787 possible_ortholog 1 retrogene
retro_shar_573,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_676 77.49 64.52
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Download FASTA sequences of all ENSGGOG00000011741 retrocopies