Parental gene:

Litaf, ENSRNOG00000002520

Aliases:Litaf, EET-1, Pig7
Description:Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [Source:UniProtKB/Swiss-Prot;Acc:P0C0T0]
Organism:Rat (Rattus norvegicus)
Coordinates:10:3548078..3589969(+)


>ENSRNOG00000002520
ATGTCGGCTCCAGGACCTTACCAAGCAGCTGCAGGCCCTTCTGTAATGCCTACTGCACCCCCAACCTATGAAGAAACAGT
GGGTGTCAACAGTTACTACCCAACGCCCCCAGCACCTCAGCCGGGACCAGCCACAGGGCTCATTACGGGCCCGGATGGGA
AGGGCATGAATCCACCTTCGTACTACACCCAGCCCGTGCCTGTCCCCAACGCCAACGCAATTGCAGTGCAGACGGTTTAT
GTGCAGCAGCCCATCTCCTTCTACGACCGCCCCATCCAGATGTGCTGTCCTTCCTGCAACAAGATGATCGTGACCCAGTT
GTCCTACAATGCAGGAGCCCTCACCTGGCTCTCCTGTGGCAGTCTGTGTCTGCTGGGATGCGTCGCTGGCTGCTGCTTCA
TTCCGTTTTGCGTGGACGCCCTGCAGGATGTGGACCATTACTGCCCCAACTGCAAAGCGCTCCTGGGCACCTACAAACGT
TTGTAG

Library Parental gene expression (RPM)
SRP017611_liver 102 .94 RPM
SRP017611_kidney 95 .25 RPM
SRP017611_brain 22 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000006659 ortholog_one2one 1 retrogene
retro_cpor_704,
Macaca mulatta ENSMMUG00000008784 ortholog_one2one 1 retrogene
retro_mmul_1411,
Monodelphis domestica ENSMODG00000005014 ortholog_one2many 4 retrogenes
retro_mdom_174, retro_mdom_574, retro_mdom_887, retro_mdom_911,
Otolemur garnettii ENSOGAG00000028239 ortholog_one2one 2 retrogenes
retro_ogar_1479, retro_ogar_2820,
Pteropus vampyrus ENSPVAG00000009213 ortholog_one2one 1 retrogene
retro_pvam_261,
Tupaia belangeri ENSTBEG00000017097 ortholog_one2one 1 retrogene
retro_tbel_4388,
Tursiops truncatus ENSTTRG00000010854 ortholog_one2one 1 retrogene
retro_ttru_1244,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2056 74.31 86.34
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Download FASTA sequences of all ENSRNOG00000002520 retrocopies