Parental gene:

LITAF, ENSPVAG00000009213

Aliases:None
Description:lipopolysaccharide-induced TNF factor [Source:HGNC Symbol;Acc:16841]
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_5954:64836..69499(+)


>ENSPVAG00000009213
ATGTCTGCTCCAGGACCCTACCAGGCGGCCGCTGGGCCTTCGTCAGTGCCCACAGCGCCCCCATCCTATGAAGAGACAGT
GGCCGTTAACAGATACTACACCACGCCTCCCGCACCCATGCCTGGGCCAGCGACGGGGCTCATGACAGGCCCGGATGGGA
AGGGCATGAACCCTCCTGCGTACTACACCCAGCCAGGGCCTGTCCCCAACGCCAATGCAATTGCCGTGCAGACAGTCTAC
GTGCAGCAGCCAGTCTCCTTTTTCGACCGCCCAGTGCAGATGTGTTGTCCTTCCTGCAACAAGATGATTGTGACTCAGCT
GTCCTATAACGCCGGTGCCCTCACCTGGCTCTCCTGTGGGAGCCTGTGCCTGCTCGGTGTGCGTAGCGGGCTGCTGTTTC
ATCCCTTTCTGTGTGGACGCTCTGCAGGACGTGGACCATTACTGTCCCAACTGCAAAGCTCTCCTGGGCACCTACAAGCG
TTTGTAGGACTCGGCCAGACCTGGAGGGAGCCGTGTGTGGCAGGAAGTCCTTTCCGACTCTCACCCAGCCCCGCCCCTGG
TGGAGATATCCCCACCTTGGTGGTCGCATCTCTCCAGGGGCTTCACCTTGGTGTCTTCTTTTGGGGGGAGATCGCAAAAG
TAGCACACTTCCAAACCCCAGAAATTGCTGCTTGGAGTCGTGCACAG

Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000006659 ortholog_one2one 1 retrogene
retro_cpor_704,
Macaca mulatta ENSMMUG00000008784 ortholog_one2one 1 retrogene
retro_mmul_1411,
Monodelphis domestica ENSMODG00000005014 ortholog_one2many 4 retrogenes
retro_mdom_174, retro_mdom_574, retro_mdom_887, retro_mdom_911,
Otolemur garnettii ENSOGAG00000028239 ortholog_one2one 2 retrogenes
retro_ogar_1479, retro_ogar_2820,
Pteropus vampyrus ENSPVAG00000016131 within_species_paralog 1 retrogene
retro_pvam_342,
Rattus norvegicus ENSRNOG00000002520 ortholog_one2one 1 retrogene
retro_rnor_2056,
Tupaia belangeri ENSTBEG00000017097 ortholog_one2one 1 retrogene
retro_tbel_4388,
Tursiops truncatus ENSTTRG00000010854 ortholog_one2one 1 retrogene
retro_ttru_1244,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pvam_261 83.33 82.10
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Download FASTA sequences of all ENSPVAG00000009213 retrocopies