Parental gene:

ENSRNOG00000001556

Aliases:None
Description:None
Organism:Rat (Rattus norvegicus)
Coordinates:3:68939815..68961602(+)


>ENSRNOG00000001556
CCGCCGCCGGGTCGCCCACAGCTTGATTCCGGCGGTCGCCGCCCGCCGCCGGGGGAAGGAGGCCACGATCCAAAGGAACC
AGAGCAGCTGAGGAAGCTGTTTATTGGTGGTCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAACATTTTGAGAAAT
GGGGCACACTTACAGATTGTGTGGTAATGAGAGATCCTCAAACAAAACGTTCCAGAGGCTTTGGTTTTGTGACCTACTCT
TGTGTCGAAGAGGTGGATGCTGCAATGTGTGCTCGGCCACACAAGGTTGATGGACGTGTGGTGGAACCAAAGAGAGCTGT
TTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATTTAACAGTGAAGAAGATTTTTGTTGGTGGTATTAAAGAGGATACAG
AAGAATATAATCTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAAGTTATGGAAGATAGGCAGAGTGGG
AAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGACACAGTTGATAAAATTGTTGTTCAGAAATACCACACTAT
TAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCTGGATCACAGAGAGGTCGTGGAG
GTGGATCTGGCAACTTTATGGGACGTGGAGGAAACTTTGGTGGCGGCGGAGGAAACTTTGGGCGTGGAGGAAACTTTGGT
GGAAGAGGAGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGGCAGTTATGGAGGTGGTGATGGTGGATATAATGGATTTGG
AGGTGATGGTGGCAACTATGGTGGTGGTCCTGGTTACAGTAGTAGAGGAGGTTATGGAGGTGGTGGACCAGGATATGGAA
ACCAAGGTGGTGGATATGGTGGTGGAGGAGGAGGATATGATGGTTACAATGAAGGAGGAAATTTTGGTGGAGGT

Library Parental gene expression (RPM)
SRP017611_liver 58 .83 RPM
SRP017611_kidney 99 .51 RPM
SRP017611_brain 66 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011920 possible_ortholog 4 retrogenes
retro_amel_1407, retro_amel_557, retro_amel_715, retro_amel_765,
Cavia porcellus ENSCPOG00000004251 ortholog_one2one 3 retrogenes
retro_cpor_1516, retro_cpor_1543, retro_cpor_65,
Ficedula albicollis ENSFALG00000003215 ortholog_one2many 1 retrogene
retro_falb_15,
Gallus gallus ENSGALG00000009250 ortholog_one2many 1 retrogene
retro_ggal_10,
Monodelphis domestica ENSMODG00000019803 possible_ortholog 1 retrogene
retro_mdom_1590,
Mustela putorius furo ENSMPUG00000014103 ortholog_one2one 6 retrogenes
retro_mputfur_1141, retro_mputfur_1336, retro_mputfur_1545, retro_mputfur_603, retro_mputfur_674, retro_mputfur_779,
Oryctolagus cuniculus ENSOCUG00000002743 possible_ortholog 2 retrogenes
retro_ocun_994, retro_ocun_995,
Pelodiscus sinensis ENSPSIG00000003011 ortholog_one2many 1 retrogene
retro_psin_16,
Pan troglodytes ENSPTRG00000012676 ortholog_one2one 5 retrogenes
retro_ptro_1059, retro_ptro_2430, retro_ptro_2966, retro_ptro_683, retro_ptro_872,
Rattus norvegicus ENSRNOG00000002270 other_paralog 1 retrogene
retro_rnor_1365,
Rattus norvegicus ENSRNOG00000011175 other_paralog 3 retrogenes
retro_rnor_1824, retro_rnor_2043, retro_rnor_2339,
Rattus norvegicus ENSRNOG00000036839 within_species_paralog 17 retrogenes
retro_rnor_1001, retro_rnor_1322, retro_rnor_1658, retro_rnor_1770, retro_rnor_1786, retro_rnor_1846, retro_rnor_1987, retro_rnor_2194, retro_rnor_2482, retro_rnor_2551, retro_rnor_2619, retro_rnor_2657, retro_rnor_2881, retro_rnor_2944, retro_rnor_2945, retro_rnor_2965, retro_rnor_2969,
Sarcophilus harrisii ENSSHAG00000018255 possible_ortholog 1 retrogene
retro_shar_518,
Tarsius syrichta ENSTSYG00000012949 possible_ortholog 2 retrogenes
retro_tsyr_1480, retro_tsyr_2122,
Tursiops truncatus ENSTTRG00000014225 ortholog_one2many 3 retrogenes
retro_ttru_1459, retro_ttru_675, retro_ttru_9,
Xenopus tropicalis ENSXETG00000001806 ortholog_one2many 1 retrogene
retro_xtro_11,
Xiphophorus maculatus ENSXMAG00000000439 ortholog_one2many 1 retrogene
retro_xmac_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_348 54.55 92.14
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2. retro_rnor_959 83.67 77.04
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3. retro_rnor_1510 78.53 59.12
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4. retro_rnor_1665 92.93 61.95
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5. retro_rnor_1869 67.05 79.87
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6. retro_rnor_2053 86.12 87.42
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7. retro_rnor_2659 55.21 57.55
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8. retro_rnor_2669 84.69 65.09
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9. retro_rnor_2713 54.90 61.32
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10. retro_rnor_2776 72.04 85.22
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11. retro_rnor_2809 94.95 68.24
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Download FASTA sequences of all ENSRNOG00000001556 retrocopies