Parental gene:

SDCCAG3, ENSPTRG00000021555

Aliases:None
Description:Serologically defined colon cancer antigen 3 [Source:UniProtKB/TrEMBL;Acc:K7BM14]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:9:136000291..136006945(-)


>ENSPTRG00000021555
ATGTCGGGCTACCAGCGCCGCCCGGGCGCCACCCCGCTGTCCCGAGCCCGGAGCCTCGCCATTCCCGACGCTCCAGCGTT
CTATGAGCGCCGGTCTTGTCTCCCCCAGCTAAATTGTGAGCGCCCCCATGGCAGGGACCTGGACTCCCCCTTCTTCGGCA
TTCGGCCGGCCTTTATGTGCTATGTACCCAGCCCGGTGCTGGCTTCCGTGGGAGACACAGATTTTGGCTATGGAAAGGGG
AAATGTTCTAAGCAGAGCCCGTCAGGAGCCCACGGGACACATTTTGGAGATGACAGATTTGAAGATCTTGAAGAGGCAAA
TCCATTCTCTTTTAAAGAGTTTCTGAAGACCAAGAACCTCGGCCTGTCGAAGGAGGATCCGGCCAGCAGAATTTATGCAA
AGGAAGCCTCGAGGCATTCCCTGGGACTTGACCACAACTCCCCACCCTCCCAAACCGGGGGGTATGGCCTGGAGTATCAG
CAGCCATTTTTCGAGGACCCGACAGGGGCCGGTGACCTCCTGGATGAGGAGGAGGATGAGGACACCGGATGGAGTGGAGC
CTACCTGCCGTCTGCCATCGAGCAGACTCACCCCGAGAGGGTCCCTGCCGGCACGTCGCCCTGCAGCACATACCTTTCCT
TTTTCTCCACCCCGTCGGAGCTGGCAGGGCCTGAGTCTCTGCCCTCGTGGGCGTTGAGTGACACTGATTCTCGCGTGTCT
CCGGCCTCTCCGGCAGGGAGTCCTAGCGCAGACTTTGCGGTTCATGGAGAGTCTCTGGGAGACAGGCACCTGCGGACGCT
GCAGATAAGTTACGACGCACTGAAAGATGAAAATTCTAAGCTGAGAAGAAAGCTGAATGAGGTTCAGAGCTTCTCTGAAG
CTCAAACAGAAATGGTGAGGACACTTGAGCGGAAATTAGAAGCAAAAATGATCAAGGAGGAAAGCGACTACCACGACCTG
GAGTCGGTGGTTCAGCAGGTGGAGCAGAACCTGGAGCTGATGACCAAACGGGCTGTAAAGGCAGAAAACCACGTTGTGAA
ACTAAAACAGGAAATCAGTTTGCTCCAGGCGCAGGTCTCCAACTTCCAGCGAGAGAATGAAGCCCTGCGGTGCGGCCAGG
GCGCCAGCCTGACCGTGGTGAAGCAGAACGCCGACGTGGCCCTGCAGAACCTCCGGGTGGTCATGAATAGCGCACAGGCT
TCCATCAAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 9 .85 RPM
SRP007412_cerebellum 9 .82 RPM
SRP007412_heart 5 .04 RPM
SRP007412_kidney 19 .61 RPM
SRP007412_liver 28 .77 RPM
SRP007412_testis 46 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000165689 ortholog_one2one 1 retrogene
retro_hsap_1944,
Gorilla gorilla ENSGGOG00000010905 ortholog_one2one 1 retrogene
retro_ggor_1414,
Mus musculus ENSMUSG00000026927 ortholog_one2one 3 retrogenes
retro_mmus_1545, retro_mmus_3492, retro_mmus_711,
Nomascus leucogenys ENSNLEG00000008186 ortholog_one2one 1 retrogene
retro_nleu_891,
Otolemur garnettii ENSOGAG00000015872 ortholog_one2many 1 retrogene
retro_ogar_3418,
Pongo abelii ENSPPYG00000019772 ortholog_one2one 2 retrogenes
retro_pabe_1612, retro_pabe_256,
Rattus norvegicus ENSRNOG00000018876 ortholog_one2many 2 retrogenes
retro_rnor_1215, retro_rnor_2770,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1300 91.87 81.89
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Download FASTA sequences of all ENSPTRG00000021555 retrocopies