Parental gene:

SSR3, ENSPTRG00000015560

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:3:160280900..160295953(-)


>ENSPTRG00000015560
ATGGCTCCTAAAGGCAGCTCCAAACAGCAGTCTGAGGAGGACCTGCTCCTGCAGGATTTCAGCCGCAATCTCTCGGCCAA
GTCCTCCGCGCTCTTCTTCGGGAACGCTTTCATCGTGTCTGCCATCCCCATCTGGTTATACTGGCGAATATGGCATATGG
ATCTTATTCAGTCTGCTGTTTTGTATAGTGTGATGACCCTAGTAAGCACATATTTGGTAGCCTTTGCATACAAGAATGTG
AAATTTGTTCTCAAGCACAAAGTAGCACAGAAGAGGGAGGATGCTGTTTCCAAAGAAGTGACTCGAAAACTTTCTGAAGC
TGATAATAGAAAGATGTCTCGGAAGGAGAAAGATGAAAGAATCTTGTGGAAGAAGAATGAAGTTGCTGATTATGAAGCTA
CAACATTTTCCATCTTCTATAACAACACTCTGTTCCTGGTCGTGGTCATTGTTGCTTCCTTCTTCATATTGAAGAACTTC
AACCCCACAGTGAACTACATTTTGTCCATAAGTGCTTCATCAGGACTCATCGCCCTCCTGTCTACTGGCTCCAAATAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 31 .12 RPM
SRP007412_cerebellum 27 .96 RPM
SRP007412_heart 90 .12 RPM
SRP007412_kidney 56 .23 RPM
SRP007412_liver 70 .84 RPM
SRP007412_testis 78 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003125 ortholog_one2one 1 retrogene
retro_amel_832,
Canis familiaris ENSCAFG00000008870 ortholog_one2one 5 retrogenes
retro_cfam_1296, retro_cfam_1370, retro_cfam_1924, retro_cfam_2029, retro_cfam_2041,
Choloepus hoffmanni ENSCHOG00000001517 ortholog_one2many 1 retrogene
retro_chof_29,
Callithrix jacchus ENSCJAG00000004643 ortholog_one2one 4 retrogenes
retro_cjac_1059, retro_cjac_1503, retro_cjac_2369, retro_cjac_3213,
Cavia porcellus ENSCPOG00000005898 ortholog_one2one 2 retrogenes
retro_cpor_1243, retro_cpor_826,
Dasypus novemcinctus ENSDNOG00000000752 ortholog_one2one 2 retrogenes
retro_dnov_1922, retro_dnov_632,
Homo sapiens ENSG00000114850 ortholog_one2one 1 retrogene
retro_hsap_173,
Gorilla gorilla ENSGGOG00000024038 ortholog_one2one 1 retrogene
retro_ggor_255,
Myotis lucifugus ENSMLUG00000015478 ortholog_one2one 3 retrogenes
retro_mluc_1624, retro_mluc_1728, retro_mluc_2146,
Macaca mulatta ENSMMUG00000016970 ortholog_one2one 1 retrogene
retro_mmul_383,
Otolemur garnettii ENSOGAG00000010589 ortholog_one2one 2 retrogenes
retro_ogar_2089, retro_ogar_3483,
Pongo abelii ENSPPYG00000014233 ortholog_one2one 1 retrogene
retro_pabe_456,
Tarsius syrichta ENSTSYG00000010578 ortholog_one2one 1 retrogene
retro_tsyr_660,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_163 91.44 100.00
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Download FASTA sequences of all ENSPTRG00000015560 retrocopies