Parental gene: | SSR3, ENSCAFG00000008870 |
| Aliases: | None |
| Description: | signal sequence receptor, gamma (translocon-associated protein gamma) [Source:HGNC Symbol;Acc:11325] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 23:50139105..50185218(-) |
>ENSCAFG00000008870
ATGGCTCCCAAAGGCGGCTCCAAGCAGCAGTCCGAGGAGGACCTGCTCCTGCAGGACTTCAGCCGCAACCTGTCGGCCAA
GTCCTCCGCGCTCTTCTTCGGGAACGCCTTCATCGTGTCCGCCATCCCCATCTGGCTGTATTGGCGAATATGGCACATGG
ATCTCATTCAGTCGGCCGTGCTCTACAGTGTGATGACCCTCGTAAGCACTTACCTGGTGGCTTTCGCATACAAAAACGTG
AAATTTGTTCTCAAACACAAAGTAGCACAGAAGAGGGAGGATGCTGTTTCCAAAGAAGTGACTCGAAAACTCTCTGAAGC
TGATAACAGAAAGATGTCTCGAAAGGAAAAAGATGAAAGAATTTTGTGGAAGAAGAATGAAGTTGCTGATTATGAAGCTA
CAACATTTTCCATCTTCTATAACAACACCCTATTCCTGGTCTTGGTCATTGTTGCCTCCTTCTTTATATTGAAGAACTTC
AACCCAACGGTGAACTATATTTTGTCCATAAGTGCTTCATCAGGCCTCATCGCCCTTCTGTCTACTGGCTCCAAGTAG
ATGGCTCCCAAAGGCGGCTCCAAGCAGCAGTCCGAGGAGGACCTGCTCCTGCAGGACTTCAGCCGCAACCTGTCGGCCAA
GTCCTCCGCGCTCTTCTTCGGGAACGCCTTCATCGTGTCCGCCATCCCCATCTGGCTGTATTGGCGAATATGGCACATGG
ATCTCATTCAGTCGGCCGTGCTCTACAGTGTGATGACCCTCGTAAGCACTTACCTGGTGGCTTTCGCATACAAAAACGTG
AAATTTGTTCTCAAACACAAAGTAGCACAGAAGAGGGAGGATGCTGTTTCCAAAGAAGTGACTCGAAAACTCTCTGAAGC
TGATAACAGAAAGATGTCTCGAAAGGAAAAAGATGAAAGAATTTTGTGGAAGAAGAATGAAGTTGCTGATTATGAAGCTA
CAACATTTTCCATCTTCTATAACAACACCCTATTCCTGGTCTTGGTCATTGTTGCCTCCTTCTTTATATTGAAGAACTTC
AACCCAACGGTGAACTATATTTTGTCCATAAGTGCTTCATCAGGCCTCATCGCCCTTCTGTCTACTGGCTCCAAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 18 .42 RPM |
| SRP017611_kidney | 42 .53 RPM |
| SRP017611_liver | 17 .26 RPM |
| SRP012049_cerebellum | 20 .66 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003125 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000001517 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000004643 | ortholog_one2one | 4 retrogenes | |
| Cavia porcellus | ENSCPOG00000005898 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000000752 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000114850 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000024038 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000015478 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000016970 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000010589 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000014233 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000015560 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000010578 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_1296 | 93.22 | 63.78 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_1370 | 94.95 | 53.51 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_1924 | 96.61 | 63.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_2029 | 95.12 | 87.57 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_2041 | 96.61 | 63.78 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000008870 retrocopies