Parental gene: | EIF2S2, ENSPTRG00000013412 |
| Aliases: | None |
| Description: | Pan troglodytes eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa (EIF2S2), mRNA. [Source:RefSeq mRNA;Acc:NM_001098556] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 20:30865342..30889353(-) |
>ENSPTRG00000013412
ATGATTTTTGATCCTACTATGAGCAAGAAGAAAAAGAAGAAGAAGAAGCCTTTTATGTTAGATGAGGAAGGGGATACCCA
AACAGAGGAAACCCAGCCTTCAGAAACAAAAGAAGTGGAGCCAGAGCCAACTGAGGACAAGGATTTGGAAGCTGATGAAG
AGGACACTAGGAAAAAAGATGCTTCTGATGATCTAGATGACTTGAACTTCTTTAATCAAAAGAAAAAGAAGAAAAAAACT
AAAAAGATATTTGATATTGATGAAGCTGAAGAAGGTGTAAAGGATCTTAAGATTGAAAGTGATGTTCAAGAACCAACTGA
ACCAGAGGATGACCTTGACATTATGCTTGGCAATAAAAAGAAGAAAAAGAAGAATGTTAAGTTCCCAGATGAGGATGAAA
TACTAGAGAAAGATGAAGCTCTAGAAGATGAAGACAACAAAAAAGATGATGGTATCTCATTCAGTAATCAGACAGGCCCT
GCTTGGGCAGGCTCAGAAAGAGACTACACATACGAGGAGCTGCTGAATCGAGTGTTCAACATCATGAGGGAAAAGAATCC
AGATATGGTTGCTGGGGAGAAAAGGAAATTTGTCATGAAACCTCCACAAGTCGTCCGAGTAGGAACCAAGAAAACTTCTT
TTGTCAACTTCACAGATATCTGTAAACTATTACATCGTCAGCCCAAACATCTCCTTGCATTTTTGTTGGCTGAACTGGGT
ACAAGTGGTTCTATAGATGGTAATAACCAACTTGTAATCAAAGGAAGATTCCAACAGAAACAGATAGAAAATGTCTTGAG
AAGATATATCAAGGAATATGTCACTTGTCACACATGCCGATCACCGGACACAATCCTGCAGAAGGACACGCGACTCTATT
TCCTACAGTGCGAAACTTGTCATTCTAGATGTTCTGTTGCCAGTATCAAAACCGGCTTCCAGGCTGTCACGGGCAAGCGA
GCACAGCTCCGTGCCAAAGCTAACTAA
ATGATTTTTGATCCTACTATGAGCAAGAAGAAAAAGAAGAAGAAGAAGCCTTTTATGTTAGATGAGGAAGGGGATACCCA
AACAGAGGAAACCCAGCCTTCAGAAACAAAAGAAGTGGAGCCAGAGCCAACTGAGGACAAGGATTTGGAAGCTGATGAAG
AGGACACTAGGAAAAAAGATGCTTCTGATGATCTAGATGACTTGAACTTCTTTAATCAAAAGAAAAAGAAGAAAAAAACT
AAAAAGATATTTGATATTGATGAAGCTGAAGAAGGTGTAAAGGATCTTAAGATTGAAAGTGATGTTCAAGAACCAACTGA
ACCAGAGGATGACCTTGACATTATGCTTGGCAATAAAAAGAAGAAAAAGAAGAATGTTAAGTTCCCAGATGAGGATGAAA
TACTAGAGAAAGATGAAGCTCTAGAAGATGAAGACAACAAAAAAGATGATGGTATCTCATTCAGTAATCAGACAGGCCCT
GCTTGGGCAGGCTCAGAAAGAGACTACACATACGAGGAGCTGCTGAATCGAGTGTTCAACATCATGAGGGAAAAGAATCC
AGATATGGTTGCTGGGGAGAAAAGGAAATTTGTCATGAAACCTCCACAAGTCGTCCGAGTAGGAACCAAGAAAACTTCTT
TTGTCAACTTCACAGATATCTGTAAACTATTACATCGTCAGCCCAAACATCTCCTTGCATTTTTGTTGGCTGAACTGGGT
ACAAGTGGTTCTATAGATGGTAATAACCAACTTGTAATCAAAGGAAGATTCCAACAGAAACAGATAGAAAATGTCTTGAG
AAGATATATCAAGGAATATGTCACTTGTCACACATGCCGATCACCGGACACAATCCTGCAGAAGGACACGCGACTCTATT
TCCTACAGTGCGAAACTTGTCATTCTAGATGTTCTGTTGCCAGTATCAAAACCGGCTTCCAGGCTGTCACGGGCAAGCGA
GCACAGCTCCGTGCCAAAGCTAACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 41 .42 RPM |
| SRP007412_cerebellum | 32 .87 RPM |
| SRP007412_heart | 44 .77 RPM |
| SRP007412_kidney | 45 .53 RPM |
| SRP007412_liver | 57 .91 RPM |
| SRP007412_testis | 74 .51 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000018334 | ortholog_one2many | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000015439 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000001922 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000125977 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000015546 | ortholog_one2one | 5 retrogenes | |
| Microcebus murinus | ENSMICG00000006944 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000018095 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000002805 | ortholog_one2one | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000010034 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000001417 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000010933 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000017447 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_508 | 90.69 | 75.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1600 | 66.67 | 55.49 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000013412 retrocopies