Parental gene: | PSMD7, ENSPTRG00000008343 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 16:73665887..73675611(+) |
>ENSPTRG00000008343
ATGCCGGAGCTGGCGGTGCAGAAGGTGGTGGTCCACCCCCTGGTGCTGCTCAGTGTGGTGGATCATTTCAACCGAATCGG
CAAGGTTGGAAACCAGAAGCGTGTTGTTGGTGTGCTTTTGGGGTCATGGCAAAAGAAAGTACTTGATGTATCGAACAGTT
TTGCAGTTCCTTTTGATGAAGATGACAAAGACGATTCTGTATGGTTTTTAGACCATGATTATTTGGAAAACATGTATGGA
ATGTTTAAGAAAGTCAATGCCAGGGAAAGAATAGTTGGCTGGTACCACACAGGCCCTAAACTACACAAGAATGACATTGC
CATCAACGAACTCATGAAAAGATACTGTCCTAATTCCGTATTGGTCATCATTGATGTGAAGCCGAAGGACCTAGGGCTGC
CTACAGAAGCGTACATTTCAGTGGAAGAAGTCCATGATGATGGAACTCCAACCTCGAAAACATTTGAACACGTGACCAGT
GAAATAGGAGCAGAGGAAGCTGAGGAAGTTGGAGTTGAACACTTGTTACGAGATATCAAAGACACGACGGTGGGCACTCT
GTCCCAGCGGATCACAAACCAGGTCCATGGTTTGAAGGGACTGAACTCCAAGCTTCTGGATATCAGGAGCTACCTGGAAA
AAGTCGCCACAGGCAAGCTGCCCATCAACCACCAGATCATCTACCAGCTGCAGGACGTCTTCAACCTGCTGCCAGACGTC
AGCCTGCAGGAGTTCGTCAAGGCCTTTTACCTGAAGACCAATGACCAGATGGTGGTAGTGTACTTGGCCTCGCTGATCCG
TTCTGTGGTCGCCCTGCACAACCTCATCAACAACAAGATTGCCAACCGGGATGCAGAGAAGAAAGAAGGGCAGGAGAAAG
AAGAGAGCAAAAAGGATAGGAAAGAGGACAAGGAGAAAGATAAAGATAAGGAAAAGAGTGATGTAAAGAAAGAGGAGAAA
AAGGAGAAAAAGTAA
ATGCCGGAGCTGGCGGTGCAGAAGGTGGTGGTCCACCCCCTGGTGCTGCTCAGTGTGGTGGATCATTTCAACCGAATCGG
CAAGGTTGGAAACCAGAAGCGTGTTGTTGGTGTGCTTTTGGGGTCATGGCAAAAGAAAGTACTTGATGTATCGAACAGTT
TTGCAGTTCCTTTTGATGAAGATGACAAAGACGATTCTGTATGGTTTTTAGACCATGATTATTTGGAAAACATGTATGGA
ATGTTTAAGAAAGTCAATGCCAGGGAAAGAATAGTTGGCTGGTACCACACAGGCCCTAAACTACACAAGAATGACATTGC
CATCAACGAACTCATGAAAAGATACTGTCCTAATTCCGTATTGGTCATCATTGATGTGAAGCCGAAGGACCTAGGGCTGC
CTACAGAAGCGTACATTTCAGTGGAAGAAGTCCATGATGATGGAACTCCAACCTCGAAAACATTTGAACACGTGACCAGT
GAAATAGGAGCAGAGGAAGCTGAGGAAGTTGGAGTTGAACACTTGTTACGAGATATCAAAGACACGACGGTGGGCACTCT
GTCCCAGCGGATCACAAACCAGGTCCATGGTTTGAAGGGACTGAACTCCAAGCTTCTGGATATCAGGAGCTACCTGGAAA
AAGTCGCCACAGGCAAGCTGCCCATCAACCACCAGATCATCTACCAGCTGCAGGACGTCTTCAACCTGCTGCCAGACGTC
AGCCTGCAGGAGTTCGTCAAGGCCTTTTACCTGAAGACCAATGACCAGATGGTGGTAGTGTACTTGGCCTCGCTGATCCG
TTCTGTGGTCGCCCTGCACAACCTCATCAACAACAAGATTGCCAACCGGGATGCAGAGAAGAAAGAAGGGCAGGAGAAAG
AAGAGAGCAAAAAGGATAGGAAAGAGGACAAGGAGAAAGATAAAGATAAGGAAAAGAGTGATGTAAAGAAAGAGGAGAAA
AAGGAGAAAAAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 67 .82 RPM |
| SRP007412_cerebellum | 65 .50 RPM |
| SRP007412_heart | 88 .05 RPM |
| SRP007412_kidney | 57 .82 RPM |
| SRP007412_liver | 78 .69 RPM |
| SRP007412_testis | 110 .23 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000015129 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000103035 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000009774 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000005416 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000011125 | ortholog_one2one | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005608 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000014868 | possible_ortholog | 1 retrogene | |
| Procavia capensis | ENSPCAG00000014356 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000025918 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000003326 | within_species_paralog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000016950 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_205 | 75.60 | 89.81 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1192 | 88.04 | 56.48 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000008343 retrocopies