Parental gene: | PSMD7, ENSCJAG00000015129 |
| Aliases: | None |
| Description: | proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 [Source:HGNC Symbol;Acc:9565] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 20:23858993..23869970(-) |
>ENSCJAG00000015129
ATGCCGGAGCTGGCGGTGCAGAAGGTGGTGGTCCACCCCCTGGTGCTGCTTAGTGTGGTGGATCATTTCAACCGAATTGG
CAAGGTTGGAAACCAGAAGCGTGTTGTTGGTGTGCTTTTGGGGTCATGGCAAAAGAAAGTACTGGATGTATCGAACAGTT
TTGCAGTTCCTTTTGATGAAGATGACAAAGACGATTCTGTGTGGTTTTTAGACCATGATTATTTGGAAAACATGTATGGA
ATGTTTAAGAAAGTCAATGCCAGAGAAAGAATAGTTGGCTGGTACCACACAGGCCCGAAACTACACAAGAATGACATTGC
CATCAACGAACTCATGAAAAGATACTGTCCTAATTCCGTATTGGTCATTATTGACGTGAAACCGAAGGACCTGGGGCTGC
CCACAGAAGCATACATTTCAGTGGAAGAAGTCCATGATGATGGAACTCCAACCTCAAAAACGTTTGAACACGTGACCAGT
GAAATTGGAGCAGAGGAAGCTGAGGAAGTTGGAGTTGAACACTTGTTACGAGACATCAAAGACACAACGGTGGGCACTCT
GTCCCAGCGGATCACAAACCAGGTCCATGGTTTGAAGGGACTGAACTCCAAGCTTCTGGATATCAGGAGCTACCTGGAAA
AAGTAGCCACAGGAAAGCTGCCCATCAACCACCAGATCATCTACCAGCTGCAGGATGTCTTCAACCTGCTGCCAGACGTC
AGCCTGCAGGAGTTCGTCAAAGCCTTTTACCTGAAGACCAACGACCAGATGGTGGTGGTATATCTGGCCTCGCTGATCCG
TTCCGTGGTTGCCCTGCACAACCTCATCAACAACAAGATTGCCAACCGGGATGCAGAGAAGAAAGAAGGGCAGGAGAAAG
AAGAAAGCAAAAAGGATAGGAAAGAGGACAAGGAGAAAGATAAAGATAAGGAAAAGAGTGACGGAAAGAAAGAGGAAAAA
AAGGAGAAAAAGTAA
ATGCCGGAGCTGGCGGTGCAGAAGGTGGTGGTCCACCCCCTGGTGCTGCTTAGTGTGGTGGATCATTTCAACCGAATTGG
CAAGGTTGGAAACCAGAAGCGTGTTGTTGGTGTGCTTTTGGGGTCATGGCAAAAGAAAGTACTGGATGTATCGAACAGTT
TTGCAGTTCCTTTTGATGAAGATGACAAAGACGATTCTGTGTGGTTTTTAGACCATGATTATTTGGAAAACATGTATGGA
ATGTTTAAGAAAGTCAATGCCAGAGAAAGAATAGTTGGCTGGTACCACACAGGCCCGAAACTACACAAGAATGACATTGC
CATCAACGAACTCATGAAAAGATACTGTCCTAATTCCGTATTGGTCATTATTGACGTGAAACCGAAGGACCTGGGGCTGC
CCACAGAAGCATACATTTCAGTGGAAGAAGTCCATGATGATGGAACTCCAACCTCAAAAACGTTTGAACACGTGACCAGT
GAAATTGGAGCAGAGGAAGCTGAGGAAGTTGGAGTTGAACACTTGTTACGAGACATCAAAGACACAACGGTGGGCACTCT
GTCCCAGCGGATCACAAACCAGGTCCATGGTTTGAAGGGACTGAACTCCAAGCTTCTGGATATCAGGAGCTACCTGGAAA
AAGTAGCCACAGGAAAGCTGCCCATCAACCACCAGATCATCTACCAGCTGCAGGATGTCTTCAACCTGCTGCCAGACGTC
AGCCTGCAGGAGTTCGTCAAAGCCTTTTACCTGAAGACCAACGACCAGATGGTGGTGGTATATCTGGCCTCGCTGATCCG
TTCCGTGGTTGCCCTGCACAACCTCATCAACAACAAGATTGCCAACCGGGATGCAGAGAAGAAAGAAGGGCAGGAGAAAG
AAGAAAGCAAAAAGGATAGGAAAGAGGACAAGGAGAAAGATAAAGATAAGGAAAAGAGTGACGGAAAGAAAGAGGAAAAA
AAGGAGAAAAAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 25 .95 RPM |
| SRP051959_skeletal_muscle | 40 .53 RPM |
| SRP051959_lymph_node | 26 .46 RPM |
| SRP051959_lung | 21 .99 RPM |
| SRP051959_liver | 22 .87 RPM |
| SRP051959_kidney | 22 .54 RPM |
| SRP051959_heart | 23 .57 RPM |
| SRP051959_colon | 21 .79 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000011903 | within_species_paralog | 1 retrogene | |
| Homo sapiens | ENSG00000103035 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000009774 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000005416 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000011125 | ortholog_one2one | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005608 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000014868 | possible_ortholog | 1 retrogene | |
| Procavia capensis | ENSPCAG00000014356 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000025918 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000008343 | ortholog_one2one | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000016950 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1520 | 80.92 | 99.07 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2910 | 76.19 | 63.89 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000015129 retrocopies