Parental gene:

PAFAH1B2, ENSPTRG00000004318

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:11:115046870..115073676(+)


>ENSPTRG00000004318
ATGAGCCAAGGAGACTCAAACCCAGCAGCTATTCCGCATGCAGCAGAAGATATTCAAGGAGATGACCGATGGATGTCTCA
GCACAACAGATTTGTTTTGGACTGTAAAGACAAAGAGCCTGATGTACTGTTCGTGGGAGACTCCATGGTGCAGTTAATGC
AGCAATATGAGATATGGCGAGAGCTTTTTTCCCCACTTCATGCACTGAATTTTGGAATTGGGGGAGATACAACAAGACAT
GTTTTGTGGAGACTAAAGAATGGAGAACTGGAGAATATTAAGCCTAAGGTCATTGTTGTCTGGGTAGGAACAAATAACCA
CGAAAATACAGCAGAAGAAGTAGCAGGTGGGATCGAGGCCATTGTACAACTTATCAACACAAGGCAGCCACAGGCCAAAA
TCATTGTATTGGGTTTGTTACCTCGAGGTGAGAAACCCAATCCTTTGAGGCAAAAGAACGCCAAGGTGAACCAACTCCTC
AAGGTTTCGCTGCCGAAGCTTGCCAACGTGCAGCTCCTGGATACCGACGGGGGTTTTGTGCACTCGGACGGTGCCATCTC
CTGCCACGACATGTTTGATTTTCTGCATCTGACAGGAGGGGGCTATGCAAAGATCTGCAAACCCCTGCATGAACTGATCA
TGCAGTTGTTGGAGGAAACACCTGAGGAGAAACAAACCACCATTGCCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 102 .19 RPM
SRP007412_cerebellum 101 .27 RPM
SRP007412_heart 40 .66 RPM
SRP007412_kidney 55 .42 RPM
SRP007412_liver 33 .72 RPM
SRP007412_testis 69 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008628 ortholog_one2one 2 retrogenes
retro_amel_1145, retro_amel_818,
Canis familiaris ENSCAFG00000013226 ortholog_one2one 1 retrogene
retro_cfam_1335,
Callithrix jacchus ENSCJAG00000012698 ortholog_one2one 1 retrogene
retro_cjac_3325,
Dipodomys ordii ENSDORG00000011274 ortholog_one2one 1 retrogene
retro_dord_560,
Felis catus ENSFCAG00000029945 ortholog_one2one 1 retrogene
retro_fcat_270,
Homo sapiens ENSG00000168092 ortholog_one2one 2 retrogenes
retro_hsap_1148, retro_hsap_4661,
Gorilla gorilla ENSGGOG00000028197 ortholog_one2one 2 retrogenes
retro_ggor_2893, retro_ggor_893,
Macaca mulatta ENSMMUG00000002050 ortholog_one2one 2 retrogenes
retro_mmul_2481, retro_mmul_892,
Mustela putorius furo ENSMPUG00000004246 ortholog_one2one 1 retrogene
retro_mputfur_898,
Nomascus leucogenys ENSNLEG00000007337 ortholog_one2one 2 retrogenes
retro_nleu_1096, retro_nleu_946,
Pongo abelii ENSPPYG00000003907 ortholog_one2one 2 retrogenes
retro_pabe_3621, retro_pabe_953,
Rattus norvegicus ENSRNOG00000018032 ortholog_one2one 1 retrogene
retro_rnor_2585,
Sarcophilus harrisii ENSSHAG00000011403 ortholog_one2one 1 retrogene
retro_shar_617,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_782 72.22 55.02
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2. retro_ptro_3097 85.65 100.00
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Download FASTA sequences of all ENSPTRG00000004318 retrocopies