Parental gene:

RPL27A, ENSPTRG00000003333

Aliases:None
Description:Pan troglodytes ribosomal protein L27a (RPL27A), mRNA. [Source:RefSeq mRNA;Acc:NM_001034084]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:11:8489278..8493213(+)


>ENSPTRG00000003333
CCATCCAGACTGAGGAAGACCCGGAAACTTAGGGGCCACGTGAGCCACGGCCACGGCCGCATAGGCAAGCACCGGAAGCA
CCCCGGCGGCCGCGGTAATGCTGGTGGTCTGCATCACCACCGGATCAACTTCGACAAATACCACCCAGGCTACTTTGGGA
AAGTTGGTATGAAGCATTACCACTTAAAGAGGAACCAGAGCTTCTGCCCAACTGTCAACCTTGACAAATTGTGGACTTTG
GTCAGTGAACAGACACGGGTGAATGCTGCTAAAAACAAGACTGGGGCTGCTCCCATCATTGATGTGGTGCGATCGGGCTA
CTACAAAGTTCTGGGAAAGGGAAAGCTCCCAAAGCAGCCTGTCATCGTGAAGGCCAAATTCTTCAGCAGAAGAGCTGAGG
AGAAGATTAAGAGTGTTGGGGGGGCCTGTGTCCTGGTGGCTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 113 .32 RPM
SRP007412_cerebellum 102 .78 RPM
SRP007412_heart 87 .90 RPM
SRP007412_kidney 187 .77 RPM
SRP007412_liver 154 .18 RPM
SRP007412_testis 27 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Ficedula albicollis ENSFALG00000000924 possible_ortholog 1 retrogene
retro_falb_20,
Homo sapiens ENSG00000166441 ortholog_one2many 7 retrogenes
retro_hsap_1263, retro_hsap_1908, retro_hsap_2352, retro_hsap_239, retro_hsap_3335, retro_hsap_3586, retro_hsap_3682,
Gorilla gorilla ENSGGOG00000001660 ortholog_one2one 2 retrogenes
retro_ggor_155, retro_ggor_1785,
Myotis lucifugus ENSMLUG00000016616 possible_ortholog 7 retrogenes
retro_mluc_113, retro_mluc_1253, retro_mluc_164, retro_mluc_2123, retro_mluc_2202, retro_mluc_47, retro_mluc_572,
Macaca mulatta ENSMMUG00000021828 ortholog_many2many 2 retrogenes
retro_mmul_207, retro_mmul_268,
Monodelphis domestica ENSMODG00000007480 possible_ortholog 1 retrogene
retro_mdom_575,
Mus musculus ENSMUSG00000046364 possible_ortholog 1 retrogene
retro_mmus_40,
Rattus norvegicus ENSRNOG00000014214 possible_ortholog 10 retrogenes
retro_rnor_132, retro_rnor_193, retro_rnor_1996, retro_rnor_2466, retro_rnor_253, retro_rnor_261, retro_rnor_334, retro_rnor_370, retro_rnor_565, retro_rnor_606,
Tupaia belangeri ENSTBEG00000000046 possible_ortholog 20 retrogenes
retro_tbel_1093, retro_tbel_1101, retro_tbel_1148, retro_tbel_1152, retro_tbel_1223, retro_tbel_1338, retro_tbel_1639, retro_tbel_2017, retro_tbel_2606, retro_tbel_2777, retro_tbel_298, retro_tbel_3111, retro_tbel_3496, retro_tbel_3881, retro_tbel_4566, retro_tbel_460, retro_tbel_544, retro_tbel_643, retro_tbel_925, retro_tbel_937,
Taeniopygia guttata ENSTGUG00000008355 possible_ortholog 1 retrogene
retro_tgut_18,
Tarsius syrichta ENSTSYG00000013207 ortholog_one2many 16 retrogenes
retro_tsyr_1103, retro_tsyr_155, retro_tsyr_1591, retro_tsyr_1607, retro_tsyr_1623, retro_tsyr_170, retro_tsyr_1725, retro_tsyr_187, retro_tsyr_204, retro_tsyr_283, retro_tsyr_498, retro_tsyr_50, retro_tsyr_550, retro_tsyr_608, retro_tsyr_612, retro_tsyr_716,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_33 97.95 99.32
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Download FASTA sequences of all ENSPTRG00000003333 retrocopies