Parental gene:

PDLIM1, ENSPTRG00000002783

Aliases:None
Description:PDZ and LIM domain 1 [Source:UniProtKB/TrEMBL;Acc:K7CAW2]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:10:94674840..94709008(-)


>ENSPTRG00000002783
GTCACTCCTGGAAGCAAGGCGGCTCTAGCTAATTTATGTATCGGAGATGTAATCACAGCCATTGATGGGGAAAATACTAG
CAATATGACACACTTGGAAGCTCAGAACAGAATCAAAGGCTGCACAGACAACTTGACTCTCACTGTAGCCAGATCTGAAC
ATAAAGTCTGGTCTCCTCTGGTGACGGAGGAAGGGAAGCGTCATCCATACAAGATGAATTTAGCCTCTGAACCCCAGGAG
GTCCTGCACATAGGAAGCGCCCACAACCGAAGTGCCATGCCCTTTACCGCCTCGCCTGCCTCCAGCACTACTGCCAGGGT
CATCACAAACCAGTACAACAACCCAGCTGGCCTCTACTCTTCTGAAAATATCTCCAACTTCAACAATGCCCTGGAGTCAA
AGACTGCTGCCAGCGGGGTGGAGGCGAACAGCAGACCCTTAGACCATGCTCAGCCTCCAAGCAGCCTTGTCATCGACAAA
GAATCTGAAGTTTACAAGATGCTTCAGGAGAAACAGGAGTTGAATGAGCCCCCAAAACAGTCCACGTCTTTCTTGGTTTT
GCAGGAAATCCTGGAGTCTGAAGAAAAAGGGGATCCCAACAAGCCCTCAGGATTCAGAAGTGTTAAGGCTCCTGTCACTA
AAGTGGCTGCGTCGATTGGAAATGCTCAGAAGTTGCCTATGTGTGACAAATGTGGCACTGGGATTGTCGGTGTGTTCGTG
AAGCTGCGGGACCGTCACCGCCACCCTGAGTGTTATGTGTGCACTGACTGTGGCACCAACCTGAAACAGAAGGGCCATTT
CTTTGTGGAGGATCAAATCTACTGTGAGAAGCATGCCCGGGAGCGAGTCACACCACCTGAGGGTTATGAAGTGGTCACTG
TGTTCCCCAAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 2 .07 RPM
SRP007412_cerebellum 3 .55 RPM
SRP007412_heart 115 .65 RPM
SRP007412_kidney 28 .14 RPM
SRP007412_liver 165 .44 RPM
SRP007412_testis 8 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000011182 ortholog_one2one 1 retrogene
retro_btau_690,
Canis familiaris ENSCAFG00000028553 ortholog_one2one 1 retrogene
retro_cfam_2080,
Dasypus novemcinctus ENSDNOG00000012381 ortholog_one2one 1 retrogene
retro_dnov_1119,
Homo sapiens ENSG00000107438 ortholog_one2one 2 retrogenes
retro_hsap_1815, retro_hsap_2681,
Macaca mulatta ENSMMUG00000000454 ortholog_one2one 2 retrogenes
retro_mmul_1250, retro_mmul_1419,
Mus musculus ENSMUSG00000055044 ortholog_one2one 2 retrogenes
retro_mmus_2558, retro_mmus_779,
Nomascus leucogenys ENSNLEG00000013055 ortholog_one2one 3 retrogenes
retro_nleu_1819, retro_nleu_2767, retro_nleu_2970,
Oryctolagus cuniculus ENSOCUG00000013643 ortholog_one2one 1 retrogene
retro_ocun_417,
Pongo abelii ENSPPYG00000002507 ortholog_one2one 2 retrogenes
retro_pabe_1109, retro_pabe_1485,
Tarsius syrichta ENSTSYG00000000834 ortholog_one2one 2 retrogenes
retro_tsyr_1056, retro_tsyr_1224,
Tursiops truncatus ENSTTRG00000012118 ortholog_one2one 2 retrogenes
retro_ttru_1777, retro_ttru_976,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_912 88.00 50.51
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Download FASTA sequences of all ENSPTRG00000002783 retrocopies