Parental gene: | PDLIM1, ENSMMUG00000000454 |
| Aliases: | None |
| Description: | None |
| Organism: | Rhesus macaque (Macaca mulatta) |
| Coordinates: | 9:94767869..94823960(-) |
>ENSMMUG00000000454
ATGACCACCCAGCAGATCGTCCTCCAGGGCCCGGGGCCGTGGGGCTTCCGCCTCGTGGGCGGCAAGGACTTCGAGCAGCC
TCTCGCCATTTCCCGGGTCACTCCTGGAAGCAAGGCGGCTCTAGCTAATTTATGTATCGGAGATGTAATCACAGCCATTG
ATGGGGAAAATACTAGCAATATGACGCACTTGGAAGCTCAGAACAGAATCAAAGGCTGCACAGACAACATGACTCTCACT
GTCGCCAGATCTGAACATAAAGTCTGGTCTCCTCTGGTGACGGAGGAAGGGGGGAAGCGTCATCCATACAAGATGAATTT
AGCCTCTGAACCCCAGGAGGTCCTGCACATAGGAAGCGCCCACAACCGAAGTGCCATGCCCTTTACTGCCTCGCCTGCCT
CCAGCACTACCGCCAGGGTCATCACAAACCAGTACAACAACCCAGCTGGCCTCTACTCTTCTGAAAATATCTCCAACTTC
AACAATGCCCTGGAGTCAAAGACTGCTGCCAGCGGGGTAGAAGCGAACAGCAGACCCTTAGACCATGCTCAGCCTCCAAG
CAGCCTTGTCATCGACAAAGAATCTGAAGTTTACAAGATGCTTCAGGAGAAACAGGAGTTGAATGAGCCCCCGAAACAGT
CCACGTCTTTCTTGGTTTTGCAGGAGATCCTGGAGTCTGAAGAAAAAGGGGATCCCAACAAGCCCTCAGGATTCAGAAGT
GTTAAAGCTCCTGTCACTAAAGTGGCTGCATCGATTGGAAATGCTCAGAAGTTGCCTATGTGTGACAAATGTGGCACTGG
GATTGTCGGTGTGTTCGTGAAGCTGCGGGACCATCACCGCCACCCTGAGTGTTACGTGTGCACTGACTGTGGCACCAACC
TGAAACAGAAGGGCCATTTCTTTGTGGAGGATCAAATCTACTGTGAGAAGCATGCCCGGGAGCGAGTCACACCACCTGAG
GGCTATGAAGTGGTCACCGTGTTCCCCAAGTGA
ATGACCACCCAGCAGATCGTCCTCCAGGGCCCGGGGCCGTGGGGCTTCCGCCTCGTGGGCGGCAAGGACTTCGAGCAGCC
TCTCGCCATTTCCCGGGTCACTCCTGGAAGCAAGGCGGCTCTAGCTAATTTATGTATCGGAGATGTAATCACAGCCATTG
ATGGGGAAAATACTAGCAATATGACGCACTTGGAAGCTCAGAACAGAATCAAAGGCTGCACAGACAACATGACTCTCACT
GTCGCCAGATCTGAACATAAAGTCTGGTCTCCTCTGGTGACGGAGGAAGGGGGGAAGCGTCATCCATACAAGATGAATTT
AGCCTCTGAACCCCAGGAGGTCCTGCACATAGGAAGCGCCCACAACCGAAGTGCCATGCCCTTTACTGCCTCGCCTGCCT
CCAGCACTACCGCCAGGGTCATCACAAACCAGTACAACAACCCAGCTGGCCTCTACTCTTCTGAAAATATCTCCAACTTC
AACAATGCCCTGGAGTCAAAGACTGCTGCCAGCGGGGTAGAAGCGAACAGCAGACCCTTAGACCATGCTCAGCCTCCAAG
CAGCCTTGTCATCGACAAAGAATCTGAAGTTTACAAGATGCTTCAGGAGAAACAGGAGTTGAATGAGCCCCCGAAACAGT
CCACGTCTTTCTTGGTTTTGCAGGAGATCCTGGAGTCTGAAGAAAAAGGGGATCCCAACAAGCCCTCAGGATTCAGAAGT
GTTAAAGCTCCTGTCACTAAAGTGGCTGCATCGATTGGAAATGCTCAGAAGTTGCCTATGTGTGACAAATGTGGCACTGG
GATTGTCGGTGTGTTCGTGAAGCTGCGGGACCATCACCGCCACCCTGAGTGTTACGTGTGCACTGACTGTGGCACCAACC
TGAAACAGAAGGGCCATTTCTTTGTGGAGGATCAAATCTACTGTGAGAAGCATGCCCGGGAGCGAGTCACACCACCTGAG
GGCTATGAAGTGGTCACCGTGTTCCCCAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 3 .57 RPM |
| SRP007412_brain | 6 .39 RPM |
| SRP007412_cerebellum | 1 .10 RPM |
| SRP007412_heart | 84 .97 RPM |
| SRP007412_kidney | 15 .26 RPM |
| SRP007412_liver | 32 .50 RPM |
| SRP007412_testis | 3 .13 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000011182 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000028553 | ortholog_one2many | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000012381 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000107438 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000055044 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000013055 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000013643 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000002507 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000002783 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000000834 | ortholog_one2many | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000012118 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmul_1250 | 64.50 | 50.61 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmul_1419 | 64.25 | 66.17 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMMUG00000000454 retrocopies