Parental gene: | PDLIM1, ENSPPYG00000002507 |
| Aliases: | None |
| Description: | PDZ and LIM domain 1 [Source:HGNC Symbol;Acc:2067] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 10:94133659..94192022(-) |
>ENSPPYG00000002507
ATGACCACCCAGCAGATAGTCCTCCAGGGCCCGGGGCCGTGGGGCTTCCGCCTCGTGGGCGGCAAGGACTTCGAGCAGCC
TCTCGCCATTTCCCGGGTCACTCCTGGAAGCAAGGCGGCTCTAGCTAATTTATGTATCGGAGATGTAATCACAGCCATTG
ATGGGGAAAATACTAGCAATATGACACACTTGGAAGCTCAGAACAGAATCAAAGGCTGCACAGACAACTTGACGCTCACT
GTAGCCAGATCTGAACATAAAGTCTGGTCTCCCCTGGTGACAGAGGAAGGGAAGCGTCATCCATACAGGATGAATTTAGC
CTCTGAACCCCAGGAGGTCCTGCACATAGGAAGCGCCCACAACCGAAGTGCCATGCCCTTTACCGCCTCGCCTGCCTCCA
GCACTACCGCCAGGGTCATCACAAACCAGTACAACAACCCAGCTGGCCTCTACTCTTCTGAAAATATCTCCAACTTCAAC
AATGCCCTGGAGTCAAAGACTGCTGCCAGCGGGGTGGAGGCGAACAGCAGACCCTTAGACCATGCTCAGCCTCCAAGCAG
CCTTGTCATCGACAAAGAATCTGAAGTTTACAAGATGCTTCAGGAGAAACAGGAATTGAATGAGCCCCCGAAACAGTCCA
CGTCTTTCTTGGTTTTGCAGGAAATCCTGGAGTCTGAAGAAAAAGGGGATCCCAACAAGCCCTCAGGATTCAGAAGTGTT
AAAGCTCCTGTCACTAAAGTGGCTGCGTCGATTGGAAATGCTCAGAAGTTGCCTATGTGTGACAAATGTGGCACTGGGAT
TGTCGGTGTGTTCGTGAAGCTGCGGGACCGTCACCGCCACCCTGAGTGTTATGTGTGCACTGACTGTGGCACCAACCTGA
AACAGAAGGGCCATTTCTTTGTGGAGGATCAAATCTACTGTGAGAAGCATGCCCGGGAGCGAGTCACACCACCTGAGGGC
TATGAAGTGGTCACTGTGTTCCCCAAGTGA
ATGACCACCCAGCAGATAGTCCTCCAGGGCCCGGGGCCGTGGGGCTTCCGCCTCGTGGGCGGCAAGGACTTCGAGCAGCC
TCTCGCCATTTCCCGGGTCACTCCTGGAAGCAAGGCGGCTCTAGCTAATTTATGTATCGGAGATGTAATCACAGCCATTG
ATGGGGAAAATACTAGCAATATGACACACTTGGAAGCTCAGAACAGAATCAAAGGCTGCACAGACAACTTGACGCTCACT
GTAGCCAGATCTGAACATAAAGTCTGGTCTCCCCTGGTGACAGAGGAAGGGAAGCGTCATCCATACAGGATGAATTTAGC
CTCTGAACCCCAGGAGGTCCTGCACATAGGAAGCGCCCACAACCGAAGTGCCATGCCCTTTACCGCCTCGCCTGCCTCCA
GCACTACCGCCAGGGTCATCACAAACCAGTACAACAACCCAGCTGGCCTCTACTCTTCTGAAAATATCTCCAACTTCAAC
AATGCCCTGGAGTCAAAGACTGCTGCCAGCGGGGTGGAGGCGAACAGCAGACCCTTAGACCATGCTCAGCCTCCAAGCAG
CCTTGTCATCGACAAAGAATCTGAAGTTTACAAGATGCTTCAGGAGAAACAGGAATTGAATGAGCCCCCGAAACAGTCCA
CGTCTTTCTTGGTTTTGCAGGAAATCCTGGAGTCTGAAGAAAAAGGGGATCCCAACAAGCCCTCAGGATTCAGAAGTGTT
AAAGCTCCTGTCACTAAAGTGGCTGCGTCGATTGGAAATGCTCAGAAGTTGCCTATGTGTGACAAATGTGGCACTGGGAT
TGTCGGTGTGTTCGTGAAGCTGCGGGACCGTCACCGCCACCCTGAGTGTTATGTGTGCACTGACTGTGGCACCAACCTGA
AACAGAAGGGCCATTTCTTTGTGGAGGATCAAATCTACTGTGAGAAGCATGCCCGGGAGCGAGTCACACCACCTGAGGGC
TATGAAGTGGTCACTGTGTTCCCCAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 10 .62 RPM |
| SRP007412_cerebellum | 2 .31 RPM |
| SRP007412_heart | 136 .40 RPM |
| SRP007412_kidney | 25 .36 RPM |
| SRP007412_liver | 84 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000011182 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000028553 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000012381 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000107438 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000000454 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000055044 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000013055 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000013643 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000002783 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000000834 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000012118 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1109 | 88.15 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1485 | 66.07 | 50.76 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000002507 retrocopies