Parental gene:

RPL36A, ENSPPYG00000025837

Aliases:None
Description:ribosomal protein L36a [Source:HGNC Symbol;Acc:10359]
Organism:Orangutan (Pongo abelii)
Coordinates:X:100396186..100401355(+)


>ENSPPYG00000025837
ATGATTGCTCCTACCGACTCCCATGAGGAAGTGCGATCGGGAACCTCCTATATACTTCCGTTTGCGGCGCGGCTTCTTTC
TTTCCGTGCCGATAGCGCTCACGCAAGCATGGTTAACGTCCCTAAAACCCGCCGGACTTTCTGTAAGAAGTGTGGCAAGC
ACCAACCCCATAAAGTGACACAGTACAAGAAGGGCAAGGATTCTCTCTATGCCCAGGGAAAGCGGCGTTATGACAGGAAG
CAGAGTGGCTATGGTGGGCAAACTAAGCCGATTTTCCGGAAAAAGGCTAAAACTACAAAGAAGATTGTGCTAAGGCTTGA
GTGCGTTGAGCCCAACTGCAGATCTAAGAGAATGCTGGCTATTAAAAGATGCAAGCATTTTGAACTGGGAGGAGATAAGA
AGAGAAAGGGCCAAGTGATCCAGTTCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 34 .50 RPM
SRP007412_cerebellum 31 .74 RPM
SRP007412_heart 34 .71 RPM
SRP007412_kidney 57 .97 RPM
SRP007412_liver 56 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000008503 possible_ortholog 1 retrogene
retro_acar_98,
Callithrix jacchus ENSCJAG00000004864 possible_ortholog 4 retrogenes
retro_cjac_304, retro_cjac_353, retro_cjac_55, retro_cjac_72,
Equus caballus ENSECAG00000015464 possible_ortholog 9 retrogenes
retro_ecab_129, retro_ecab_131, retro_ecab_204, retro_ecab_219, retro_ecab_265, retro_ecab_268, retro_ecab_294, retro_ecab_543, retro_ecab_646,
Homo sapiens ENSG00000241343 ortholog_one2one 14 retrogenes
retro_hsap_1477, retro_hsap_1508, retro_hsap_1595, retro_hsap_1782, retro_hsap_2, retro_hsap_2015, retro_hsap_2274, retro_hsap_2632, retro_hsap_3461, retro_hsap_3819, retro_hsap_3981, retro_hsap_4154, retro_hsap_4299, retro_hsap_647,
Monodelphis domestica ENSMODG00000025578 possible_ortholog 2 retrogenes
retro_mdom_1878, retro_mdom_971,
Mus musculus ENSMUSG00000079435 ortholog_one2one 1 retrogene
retro_mmus_4,
Pteropus vampyrus ENSPVAG00000001569 possible_ortholog 1 retrogene
retro_pvam_17,
Rattus norvegicus ENSRNOG00000011494 possible_ortholog 1 retrogene
retro_rnor_259,
Sarcophilus harrisii ENSSHAG00000013479 possible_ortholog 1 retrogene
retro_shar_467,
Ictidomys tridecemlineatus ENSSTOG00000027251 ortholog_one2one 20 retrogenes
retro_itri_1171, retro_itri_1189, retro_itri_1364, retro_itri_1405, retro_itri_1471, retro_itri_161, retro_itri_1681, retro_itri_290, retro_itri_385, retro_itri_430, retro_itri_555, retro_itri_609, retro_itri_644, retro_itri_730, retro_itri_753, retro_itri_784, retro_itri_803, retro_itri_845, retro_itri_865, retro_itri_903,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_55 99.06 74.65
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2. retro_pabe_73 93.40 74.65
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3. retro_pabe_121 97.17 74.65
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4. retro_pabe_141 82.18 71.13
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5. retro_pabe_154 78.65 62.68
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6. retro_pabe_195 100.00 73.94
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7. retro_pabe_296 80.17 81.69
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8. retro_pabe_441 79.37 88.73
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9. retro_pabe_449 78.26 80.99
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10. retro_pabe_573 70.34 80.99
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11. retro_pabe_574 72.65 80.99
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12. retro_pabe_667 79.59 65.49
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13. retro_pabe_772 68.82 65.49
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14. retro_pabe_931 84.75 81.69
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15. retro_pabe_1141 69.83 80.99
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16. retro_pabe_1174 78.45 80.99
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17. retro_pabe_1226 93.97 80.99
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18. retro_pabe_1256 73.11 83.80
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19. retro_pabe_1311 86.21 81.69
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20. retro_pabe_1463 86.55 82.39
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21. retro_pabe_1539 75.81 86.62
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22. retro_pabe_1540 83.48 80.28
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23. retro_pabe_1616 93.10 81.69
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24. retro_pabe_1650 87.78 63.38
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25. retro_pabe_1651 88.89 63.38
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26. retro_pabe_1944 88.89 80.99
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27. retro_pabe_2011 84.87 82.39
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28. retro_pabe_2331 79.13 80.99
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29. retro_pabe_2443 65.29 83.80
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30. retro_pabe_2622 87.93 81.69
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31. retro_pabe_2857 73.68 66.90
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32. retro_pabe_3057 68.42 79.58
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33. retro_pabe_3151 72.09 59.86
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34. retro_pabe_3273 78.70 76.06
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35. retro_pabe_3372 74.14 80.99
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36. retro_pabe_3687 82.20 82.39
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37. retro_pabe_3704 70.65 64.79
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Download FASTA sequences of all ENSPPYG00000025837 retrocopies