Parental gene:

ENSECAG00000015464

Aliases:None
Description:None
Organism:Horse (Equus caballus)
Coordinates:X:79760308..79763243(+)


>ENSECAG00000015464
ATGGTGAACGTTCCTAAAACCCGCCGGACTTTCTGTAAGAAGTGTGGCAAGCACCAACCCCACAAAGTAACACAATACAA
GAAGGGCAAGGATTCTCTGTATGCCCAGGGAAAGCGGCGTTATGACAGGAAGCAGAGTGGCTATGGTGGGCAGACTAAGC
CGATTTTCCGGAAAAAGGCTAAAACTACAAAGAAGATTGTGCTGAGGCTTGAATGTGTTGAGCCCAACTGCAGATCTAAG
AGAATGCTGGCTATCAAGAGATGCAAGCATTTTGAACTTGGAGGAGATAAGAAGAGAAAGGGCCAAGTGATCCAGTTCTA
A

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 138 .85 RPM
SRP021940_embryo 187 .12 RPM
SRP021940_cerebellum 63 .05 RPM
SRP021940_testis 58 .12 RPM
SRP021940_placental_villous 121 .14 RPM
SRP021940_articular_cartilage 192 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009384 possible_ortholog 1 retrogene
retro_amel_85,
Callithrix jacchus ENSCJAG00000004864 possible_ortholog 4 retrogenes
retro_cjac_304, retro_cjac_353, retro_cjac_55, retro_cjac_72,
Felis catus ENSFCAG00000015397 possible_ortholog 3 retrogenes
retro_fcat_106, retro_fcat_25, retro_fcat_80,
Homo sapiens ENSG00000241343 possible_ortholog 14 retrogenes
retro_hsap_1477, retro_hsap_1508, retro_hsap_1595, retro_hsap_1782, retro_hsap_2, retro_hsap_2015, retro_hsap_2274, retro_hsap_2632, retro_hsap_3461, retro_hsap_3819, retro_hsap_3981, retro_hsap_4154, retro_hsap_4299, retro_hsap_647,
Homo sapiens ENSG00000257529 possible_ortholog 1 retrogene
retro_hsap_1353,
Gorilla gorilla ENSGGOG00000009460 possible_ortholog 6 retrogenes
retro_ggor_13, retro_ggor_152, retro_ggor_207, retro_ggor_208, retro_ggor_42, retro_ggor_5,
Monodelphis domestica ENSMODG00000025578 possible_ortholog 2 retrogenes
retro_mdom_1878, retro_mdom_971,
Mus musculus ENSMUSG00000079435 possible_ortholog 1 retrogene
retro_mmus_4,
Nomascus leucogenys ENSNLEG00000007540 possible_ortholog 27 retrogenes
retro_nleu_1003, retro_nleu_1243, retro_nleu_1291, retro_nleu_153, retro_nleu_157, retro_nleu_1632, retro_nleu_178, retro_nleu_1833, retro_nleu_1903, retro_nleu_1959, retro_nleu_2145, retro_nleu_2345, retro_nleu_2381, retro_nleu_2699, retro_nleu_2965, retro_nleu_2995, retro_nleu_2996, retro_nleu_3027, retro_nleu_3028, retro_nleu_3059, retro_nleu_3111, retro_nleu_385, retro_nleu_453, retro_nleu_644, retro_nleu_805, retro_nleu_842, retro_nleu_991,
Otolemur garnettii ENSOGAG00000004551 possible_ortholog 6 retrogenes
retro_ogar_1160, retro_ogar_1681, retro_ogar_2390, retro_ogar_2519, retro_ogar_294, retro_ogar_470,
Pongo abelii ENSPPYG00000025837 possible_ortholog 37 retrogenes
retro_pabe_1141, retro_pabe_1174, retro_pabe_121, retro_pabe_1226, retro_pabe_1256, retro_pabe_1311, retro_pabe_141, retro_pabe_1463, retro_pabe_1539, retro_pabe_154, retro_pabe_1540, retro_pabe_1616, retro_pabe_1650, retro_pabe_1651, retro_pabe_1944, retro_pabe_195, retro_pabe_2011, retro_pabe_2331, retro_pabe_2443, retro_pabe_2622, retro_pabe_2857, retro_pabe_296, retro_pabe_3057, retro_pabe_3151, retro_pabe_3273, retro_pabe_3372, retro_pabe_3687, retro_pabe_3704, retro_pabe_441, retro_pabe_449, retro_pabe_55, retro_pabe_573, retro_pabe_574, retro_pabe_667, retro_pabe_73, retro_pabe_772, retro_pabe_931,
Pteropus vampyrus ENSPVAG00000001569 ortholog_one2one 1 retrogene
retro_pvam_17,
Rattus norvegicus ENSRNOG00000011494 ortholog_one2one 1 retrogene
retro_rnor_259,
Tursiops truncatus ENSTTRG00000012779 possible_ortholog 1 retrogene
retro_ttru_5,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_129 71.30 100.00
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2. retro_ecab_131 63.89 65.09
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3. retro_ecab_204 99.06 100.00
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4. retro_ecab_219 66.98 100.00
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5. retro_ecab_265 70.09 99.06
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6. retro_ecab_268 78.30 99.06
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7. retro_ecab_294 76.29 90.57
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8. retro_ecab_543 73.58 99.06
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9. retro_ecab_646 69.44 100.00
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Download FASTA sequences of all ENSECAG00000015464 retrocopies