Parental gene:

EIF1AX, ENSPPYG00000020176

Aliases:None
Description:Eukaryotic translation initiation factor 1A, X-chromosomal [Source:UniProtKB/Swiss-Prot;Acc:Q5RA42]
Organism:Orangutan (Pongo abelii)
Coordinates:X:20139933..20158418(-)


>ENSPPYG00000020176
ATGCCCAAGAATAAAGGTAAAGGAGGTAAAAATAGACGCAGAGGTAAGAATGAGAATGAATCTGAAAAAAGAGAACTGGT
ATTCAAAGAGGATGGTCAGGAGTATGCTCAGGTAATCAAAATGTTGGGAAATGGACGGCTAGAAGCAATGTGTTTCGATG
GTGTAAAGAGGTTATGTCACATCAGAGGAAAATTGAGAAAAAAGGTTTGGATAAATACCTCGGACATTATATTGGTTGGT
CTCCGAGACTACCAGGATAACAAAGCTGATGTAATTTTAAAATACAATGCAGACGAAGCTAGAAGTCTGAAGGCATATGG
CGAGCTTCCAGAGCATGCTAAAATCAATGAAACTGATACATTTGGTCCTGGAGATGATGATGAAATTCAGTTTGATGACA
TTGGAGATGATGATGAAGATATTGATGACATCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 64 .63 RPM
SRP007412_cerebellum 110 .17 RPM
SRP007412_heart 35 .31 RPM
SRP007412_kidney 39 .58 RPM
SRP007412_liver 28 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000017633 ortholog_one2one 3 retrogenes
retro_btau_1293, retro_btau_293, retro_btau_381,
Callithrix jacchus ENSCJAG00000005371 possible_ortholog 1 retrogene
retro_cjac_66,
Erinaceus europaeus ENSEEUG00000007518 ortholog_one2one 3 retrogenes
retro_eeur_408, retro_eeur_567, retro_eeur_686,
Homo sapiens ENSG00000173674 ortholog_one2one 2 retrogenes
retro_hsap_1431, retro_hsap_350,
Myotis lucifugus ENSMLUG00000012977 possible_ortholog 2 retrogenes
retro_mluc_250, retro_mluc_3,
Monodelphis domestica ENSMODG00000027820 possible_ortholog 1 retrogene
retro_mdom_274,
Mus musculus ENSMUSG00000067194 possible_ortholog 1 retrogene
retro_mmus_264,
Otolemur garnettii ENSOGAG00000008182 possible_ortholog 1 retrogene
retro_ogar_128,
Pan troglodytes ENSPTRG00000022504 possible_ortholog 1 retrogene
retro_ptro_978,
Rattus norvegicus ENSRNOG00000005736 possible_ortholog 1 retrogene
retro_rnor_24,
Sorex araneus ENSSARG00000013528 ortholog_one2one 1 retrogene
retro_sara_324,
Sarcophilus harrisii ENSSHAG00000010995 ortholog_one2one 1 retrogene
retro_shar_707,
Sus scrofa ENSSSCG00000029864 possible_ortholog 1 retrogene
retro_sscr_948,
Tursiops truncatus ENSTTRG00000002012 ortholog_one2one 1 retrogene
retro_ttru_1009,
Vicugna pacos ENSVPAG00000009927 ortholog_one2one 4 retrogenes
retro_vpac_47, retro_vpac_531, retro_vpac_550, retro_vpac_590,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1185 71.43 72.22
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Download FASTA sequences of all ENSPPYG00000020176 retrocopies