Parental gene: | RBM22, ENSPPYG00000015955 |
| Aliases: | None |
| Description: | pre-mRNA-splicing factor RBM22 [Source:RefSeq peptide;Acc:NP_001125624] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 5:152665568..152676701(-) |
>ENSPPYG00000015955
ATGGCGACCTCTCTGGGTTCCAACACCTACAACAGGCAGAACTGGGAGGATGCGGACTTCCCCATTCTGTGCCAGACATG
TCTTGGAGAAAACCCATATATCCGAATGACCAAAGAAAAGTATGGGAAGGAATGCAAAATCTGTGCCAGGCCATTCACAG
TGTTTCGCTGGTGCCCTGGAGTCCGCATGCGTTTCAAGAAGACTGAAGTGTGCCAAACCTGCAGTAAATTGAAGAATGTC
TGTCAGACCTGCCTCTTAGACCTAGAGTATGGCCTGCCCATCCAGGTTCGTGACGCAGGATTGTCTTTTAAAGATGACAT
GCCAAAGTCAGATGTCAACAAAGAGTACTATACACAGAATATGGAGAGAGAGATTTCTAACTCTGATGGAACACGGCCAG
TTGGCATGCTGGGGAAAGCCACATCTACCAGTGACATGCTGCTCAAACTGGCCCGGACCACACCCTACTACAAAAGGAAT
CGACCCCACATTTGCTCCTTCTGGGTGAAAGGAGAGTGTAAGAGAGGAGAGGAATGTCCATACAGACATGAGAAGCCTAC
AGATCCAGATGACCCCCTTGCTGATCAGAATATTAAAGATCGATATTATGGAATCAATGATCCTGTAGCTGACAAGCTTC
TAAAGCGGGCTTCAACAATGCCTCGGCTGGACCCACCAGAGGATAAAACTATCACCACGCTATATGTCGGTGGTCTAGGT
GATACCATTACTGAGACAGATTTAAGAAATCATTTCTACCAGTTTGGAGAGATCCGGACGATCACTGTTGTGCAGAGACA
GCAGTGTGCTTTCATCCAGTTTGCCACACGGCAGGCTGCAGAAGTGGCTGCTGAGAAGTCCTTTAATAAGTTGATTGTAA
ATGGCCGCAGACTGAATGTGAAATGGGGAAGATCCCAAGCAGCCAGAGGAAAAGAAAAAGAGAAAGATGGAACTACAGAC
TCTGGGATCAAACTAGAACCTGTTCCAGGATTGCCAGGAGCTCTTCCTCCTCCTCCTGCGGCAGAAGAAGAAGCCTCTGC
CAACTACTTCAACTTGCCCCCAAGTGGTCCTCCAGCTGTAGTGAACATTGCTCTGCCACCGCCCCCTGGCATTGCTCCAC
CCCCACCCCCAGGTTTTGGGCCACACATGTTCCACCCAATGGGACCACCCCCTCCTTTCATGAGGGCTCCAGGACCAATC
CACTATCCTTCTCAGGACCCTCAGAGGATGGGAGCTCATGCTGGAAAACACAGCAGCCCCTAG
ATGGCGACCTCTCTGGGTTCCAACACCTACAACAGGCAGAACTGGGAGGATGCGGACTTCCCCATTCTGTGCCAGACATG
TCTTGGAGAAAACCCATATATCCGAATGACCAAAGAAAAGTATGGGAAGGAATGCAAAATCTGTGCCAGGCCATTCACAG
TGTTTCGCTGGTGCCCTGGAGTCCGCATGCGTTTCAAGAAGACTGAAGTGTGCCAAACCTGCAGTAAATTGAAGAATGTC
TGTCAGACCTGCCTCTTAGACCTAGAGTATGGCCTGCCCATCCAGGTTCGTGACGCAGGATTGTCTTTTAAAGATGACAT
GCCAAAGTCAGATGTCAACAAAGAGTACTATACACAGAATATGGAGAGAGAGATTTCTAACTCTGATGGAACACGGCCAG
TTGGCATGCTGGGGAAAGCCACATCTACCAGTGACATGCTGCTCAAACTGGCCCGGACCACACCCTACTACAAAAGGAAT
CGACCCCACATTTGCTCCTTCTGGGTGAAAGGAGAGTGTAAGAGAGGAGAGGAATGTCCATACAGACATGAGAAGCCTAC
AGATCCAGATGACCCCCTTGCTGATCAGAATATTAAAGATCGATATTATGGAATCAATGATCCTGTAGCTGACAAGCTTC
TAAAGCGGGCTTCAACAATGCCTCGGCTGGACCCACCAGAGGATAAAACTATCACCACGCTATATGTCGGTGGTCTAGGT
GATACCATTACTGAGACAGATTTAAGAAATCATTTCTACCAGTTTGGAGAGATCCGGACGATCACTGTTGTGCAGAGACA
GCAGTGTGCTTTCATCCAGTTTGCCACACGGCAGGCTGCAGAAGTGGCTGCTGAGAAGTCCTTTAATAAGTTGATTGTAA
ATGGCCGCAGACTGAATGTGAAATGGGGAAGATCCCAAGCAGCCAGAGGAAAAGAAAAAGAGAAAGATGGAACTACAGAC
TCTGGGATCAAACTAGAACCTGTTCCAGGATTGCCAGGAGCTCTTCCTCCTCCTCCTGCGGCAGAAGAAGAAGCCTCTGC
CAACTACTTCAACTTGCCCCCAAGTGGTCCTCCAGCTGTAGTGAACATTGCTCTGCCACCGCCCCCTGGCATTGCTCCAC
CCCCACCCCCAGGTTTTGGGCCACACATGTTCCACCCAATGGGACCACCCCCTCCTTTCATGAGGGCTCCAGGACCAATC
CACTATCCTTCTCAGGACCCTCAGAGGATGGGAGCTCATGCTGGAAAACACAGCAGCCCCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 21 .73 RPM |
| SRP007412_cerebellum | 21 .77 RPM |
| SRP007412_heart | 9 .06 RPM |
| SRP007412_kidney | 26 .38 RPM |
| SRP007412_liver | 16 .37 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000018082 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000020963 | ortholog_one2one | 6 retrogenes | |
| Cavia porcellus | ENSCPOG00000001946 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000011166 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000086589 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000012947 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000009040 | possible_ortholog | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000020683 | ortholog_one2one | 4 retrogenes | |
| Monodelphis domestica | ENSMODG00000009574 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000017423 | ortholog_one2one | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000003939 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1412 | 61.19 | 62.38 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1594 | 65.93 | 64.05 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_2861 | 66.37 | 52.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_3486 | 68.30 | 62.62 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000015955 retrocopies