Parental gene: | MMU.4422, ENSMMUG00000020683 |
| Aliases: | None |
| Description: | pre-mRNA-splicing factor RBM22 [Source:RefSeq peptide;Acc:NP_001244425] |
| Organism: | Rhesus macaque (Macaca mulatta) |
| Coordinates: | 6:147166029..147176646(-) |
>ENSMMUG00000020683
ATGGCGACCTCTCTGGGTTCCAACACCTACAACAGGCAGAACTGGGAGGATGCGGACTTCCCCATTCTGTGCCAGACATG
TCTTGGAGAAAACCCATATATCCGAATGACCAAAGAAAAGTATGGGAAGGAATGCAAAATCTGTGCCAGGCCATTCACCG
TGTTTCGCTGGTGCCCTGGAGTCCGCATGCGTTTCAAGAAGACTGAAGTGTGCCAGACCTGCAGTAAATTGAAGAATGTC
TGTCAGACCTGCCTCTTAGACCTAGAGTATGCAGGCCTGCCCATCCAGGTTCGTGACGCAGGATTATCTTTTAAAGATGA
CATGCCAAAGTCAGATGTCAACAAAGAGTACTATACACAGAATATGGAGAGAGAGATTTCTAACTCTGATGGAACACGAC
CAGTTGGCATGCTGGGGAAAGCCACATCTACCAGTGACATGCTGCTCAAACTGGCCCGGACCACACCCTACTACAAAAGG
AATCGACCCCACATTTGCTCCTTCTGGGTGAAAGGAGAGTGTAAGAGAGGAGAGGAATGTCCATACAGACATGAGAAGCC
TACAGATCCAGATGACCCCCTTGCTGATCAGAATATTAAAGATCGATATTACGGAATCAATGATCCTGTAGCTGACAAGC
TTCTAAAGCGGGCTTCAACAATGCCTCGGCTGGACCCACCAGAGGATAAAACTATCACTACACTATATGTTGGTGGTCTA
GGTGATACCATTACTGAGACAGATTTAAGAAATCATTTCTACCAGTTTGGAGAGATCCGGACGATCACTGTTGTGCAGAG
ACAGCAGTGTGCTTTCATCCAGTTTGCCACAAGGCAAGCTGCAGAAGTGGCTGCTGAGAAGTCCTTTAATAAGTTGATTG
TAAATGGGCGCAGACTGAATGTGAAATGGGGAAGATCCCAAGCAGCCAGAGGAAAAGAAAAAGAGAAAGACGGAACTACA
GACTCTGGGATCAAACTAGAACCTGTTCCAGGATTGCCAGGAGCTCTTCCTCCTCCTCCTGCGGCAGAAGAAGAAGCCTC
TGCCAACTACTTCAACTTGCCCCCAAGTGGTCCTCCAGCTGTGGTGAACATTGCTCTGCCACCGCCCCCTGGTATTGCTC
CACCTCCTCCCCCAGGTTTTGGGCCACACATGTTTCACCCAATGGGACCACCCCCTCCTTTCATGAGGGCTCCAGGACCA
ATCCACTATCCTTCTCAGGACCCTCAGAGGATGGGAGCTCACGCTGGGAAACACAGCAGCCCCTAG
ATGGCGACCTCTCTGGGTTCCAACACCTACAACAGGCAGAACTGGGAGGATGCGGACTTCCCCATTCTGTGCCAGACATG
TCTTGGAGAAAACCCATATATCCGAATGACCAAAGAAAAGTATGGGAAGGAATGCAAAATCTGTGCCAGGCCATTCACCG
TGTTTCGCTGGTGCCCTGGAGTCCGCATGCGTTTCAAGAAGACTGAAGTGTGCCAGACCTGCAGTAAATTGAAGAATGTC
TGTCAGACCTGCCTCTTAGACCTAGAGTATGCAGGCCTGCCCATCCAGGTTCGTGACGCAGGATTATCTTTTAAAGATGA
CATGCCAAAGTCAGATGTCAACAAAGAGTACTATACACAGAATATGGAGAGAGAGATTTCTAACTCTGATGGAACACGAC
CAGTTGGCATGCTGGGGAAAGCCACATCTACCAGTGACATGCTGCTCAAACTGGCCCGGACCACACCCTACTACAAAAGG
AATCGACCCCACATTTGCTCCTTCTGGGTGAAAGGAGAGTGTAAGAGAGGAGAGGAATGTCCATACAGACATGAGAAGCC
TACAGATCCAGATGACCCCCTTGCTGATCAGAATATTAAAGATCGATATTACGGAATCAATGATCCTGTAGCTGACAAGC
TTCTAAAGCGGGCTTCAACAATGCCTCGGCTGGACCCACCAGAGGATAAAACTATCACTACACTATATGTTGGTGGTCTA
GGTGATACCATTACTGAGACAGATTTAAGAAATCATTTCTACCAGTTTGGAGAGATCCGGACGATCACTGTTGTGCAGAG
ACAGCAGTGTGCTTTCATCCAGTTTGCCACAAGGCAAGCTGCAGAAGTGGCTGCTGAGAAGTCCTTTAATAAGTTGATTG
TAAATGGGCGCAGACTGAATGTGAAATGGGGAAGATCCCAAGCAGCCAGAGGAAAAGAAAAAGAGAAAGACGGAACTACA
GACTCTGGGATCAAACTAGAACCTGTTCCAGGATTGCCAGGAGCTCTTCCTCCTCCTCCTGCGGCAGAAGAAGAAGCCTC
TGCCAACTACTTCAACTTGCCCCCAAGTGGTCCTCCAGCTGTGGTGAACATTGCTCTGCCACCGCCCCCTGGTATTGCTC
CACCTCCTCCCCCAGGTTTTGGGCCACACATGTTTCACCCAATGGGACCACCCCCTCCTTTCATGAGGGCTCCAGGACCA
ATCCACTATCCTTCTCAGGACCCTCAGAGGATGGGAGCTCACGCTGGGAAACACAGCAGCCCCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 25 .54 RPM |
| SRP007412_brain | 34 .06 RPM |
| SRP007412_cerebellum | 41 .39 RPM |
| SRP007412_heart | 15 .02 RPM |
| SRP007412_kidney | 29 .34 RPM |
| SRP007412_liver | 11 .20 RPM |
| SRP007412_testis | 25 .33 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000018082 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000020963 | ortholog_one2one | 6 retrogenes | |
| Cavia porcellus | ENSCPOG00000001946 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000011166 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000086589 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000012947 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000009040 | possible_ortholog | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000009574 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000015955 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000017423 | ortholog_one2one | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000003939 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmul_1199 | 67.08 | 56.77 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmul_1348 | 62.41 | 64.13 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmul_1553 | 61.35 | 65.32 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmul_1762 | 65.59 | 65.32 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMMUG00000020683 retrocopies