Parental gene:

ENSPPYG00000015527

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:5:71080173..71100965(-)


>ENSPPYG00000015527
ATGTTGCTTCCGAACATCCTGCTCACCGGTACACCAGGGGTTGGAAAAACCACACTAGGCAAAGAACTTGCGTCAAAATC
AGGACTGAAATACATTAATGTGGGTGATTTAGCTCGAGAAGAGCAATTGTATGATGGCTATGATGAAGAGTATGATTGTC
CCATTTTAGATGAAGACAGAGTAGTTGATGAGTTAGATAACCAAATGAGAGAAGGTGGAGTTATTGTTGATTACCATGGT
TGTGATTTCTTCCCTGAACGCTGGTTTCATATAGTTTTTGTGCTGAGAACAGATACCAACGTATTGTACGAAAGACTTGA
AACAAGGGGTTATAATGAGAAGAAACTAACAGACAATATTCAGTGTGAGATTTTTCAAGTTCTTTATGAAGAAGCCACGG
CATCCTACAAGGAAGAAATCGTGCATCAGCTGCCCAGTAATAAACCAGAAGAGCTAGAAAATAATGTAGATCAGATCTTG
AAATGGATTGAGCAGTGGATCAAAGATCATAACTCTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 18 .74 RPM
SRP007412_cerebellum 18 .73 RPM
SRP007412_heart 8 .76 RPM
SRP007412_kidney 14 .88 RPM
SRP007412_liver 8 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012471 ortholog_one2one 4 retrogenes
retro_chof_1120, retro_chof_1976, retro_chof_734, retro_chof_84,
Callithrix jacchus ENSCJAG00000036421 ortholog_one2many 1 retrogene
retro_cjac_3025,
Dasypus novemcinctus ENSDNOG00000024524 ortholog_one2one 3 retrogenes
retro_dnov_1274, retro_dnov_2010, retro_dnov_398,
Gorilla gorilla ENSGGOG00000015545 ortholog_one2one 1 retrogene
retro_ggor_864,
Macropus eugenii ENSMEUG00000016022 ortholog_one2one 12 retrogenes
retro_meug_1043, retro_meug_132, retro_meug_134, retro_meug_1480, retro_meug_1547, retro_meug_1622, retro_meug_284, retro_meug_332, retro_meug_364, retro_meug_427, retro_meug_722, retro_meug_897,
Myotis lucifugus ENSMLUG00000028932 ortholog_one2one 4 retrogenes
retro_mluc_1134, retro_mluc_1330, retro_mluc_1661, retro_mluc_458,
Monodelphis domestica ENSMODG00000019421 ortholog_one2many 14 retrogenes
retro_mdom_1016, retro_mdom_1136, retro_mdom_1204, retro_mdom_1430, retro_mdom_1826, retro_mdom_1827, retro_mdom_2023, retro_mdom_409, retro_mdom_459, retro_mdom_519, retro_mdom_55, retro_mdom_666, retro_mdom_845, retro_mdom_913,
Mustela putorius furo ENSMPUG00000014588 ortholog_one2one 1 retrogene
retro_mputfur_830,
Mus musculus ENSMUSG00000078941 ortholog_one2one 2 retrogenes
retro_mmus_3717, retro_mmus_814,
Nomascus leucogenys ENSNLEG00000004086 ortholog_one2one 2 retrogenes
retro_nleu_2237, retro_nleu_2670,
Oryctolagus cuniculus ENSOCUG00000020970 ortholog_one2many 1 retrogene
retro_ocun_6,
Otolemur garnettii ENSOGAG00000027736 ortholog_one2one 4 retrogenes
retro_ogar_1080, retro_ogar_2051, retro_ogar_3344, retro_ogar_876,
Pan troglodytes ENSPTRG00000016949 ortholog_one2one 10 retrogenes
retro_ptro_138, retro_ptro_2726, retro_ptro_3286, retro_ptro_3291, retro_ptro_3299, retro_ptro_3301, retro_ptro_3303, retro_ptro_3306, retro_ptro_3308, retro_ptro_761,
Rattus norvegicus ENSRNOG00000039848 ortholog_one2many 1 retrogene
retro_rnor_280,
Sarcophilus harrisii ENSSHAG00000017216 ortholog_one2one 2 retrogenes
retro_shar_451, retro_shar_511,
Ictidomys tridecemlineatus ENSSTOG00000024448 ortholog_one2one 2 retrogenes
retro_itri_1475, retro_itri_995,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_483 67.21 68.60
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2. retro_pabe_835 87.97 91.28
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3. retro_pabe_3298 84.56 86.05
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Download FASTA sequences of all ENSPPYG00000015527 retrocopies