Parental gene:

ATG3, ENSPPYG00000013548

Aliases:None
Description:autophagy related 3 [Source:HGNC Symbol;Acc:20962]
Organism:Orangutan (Pongo abelii)
Coordinates:3:20264064..20292940(+)


>ENSPPYG00000013548
ATGCAGAATGTGATTAATACTGTGAAGGGAAAGGCACTGGAAGTGGCTGAGTACCTGACCCCGGTCCTCAAGGAATCAAA
GTTTAAGGAAACAGGTGTAATTACCCCAGAAGAGTTTGTGGCAGCTGGAGATCACCTAGTCCACCACTGTCCAACATGGC
AATGGGCTACAGGGGAAGAATTGAAAGTGAAGGCATACCTACCAACAGGCAAACAATTTTTGGTAACCAAAAATGTGCCG
TGCTATAAGCGGTGCAAACAGATGGAATATTCAGATGAATTGGAAGCTATCATTGAAGAAGATGATGGTGATGGCGGATG
GGTAGATACATATCACAACACAGGTATTACAGGAATAACCGAAGCAGTTAAAGAGATCACACTGGAAAATAAGGACAATA
TAAGACTTCAAGATTGCTCAACACTATGTGAAGAGGAAGAAGACGAAGATGAAGGAGAAGCTGCAGATATGGAAGAATAT
GAAGAGAGTGGATTGTTGGAAACAGATGAGGCTACCCTAGATACAAGGAAAATAGTAGAAGCTTGTAAAGCCAAAACTGA
TGCTGGCGGTGAAGATGCTATTTTGCAAACCAGAACTTACGACCTTTACATCACTTACGATAAATATTACCAGACTCCAC
GATTATGGTTAGGCTATGATGAGCAACGGCAGCCTTTAACAGTTGAGCACATGTATGAAGACATCAGTCAGGATCATGTG
AAGAAAACAGTGACCATTGAAAATCACCCTCATCTGCCACCACCTCCCATGTGTTCAGTTCACCCATGCAGGCATGCTGA
GGTGATGAAGAAAATCATTGAGACTGTTGCAGAAGGAGGGGGAGAACTTGGAGTTCATATGTATCTTCTTATTTTCTTGA
AATTTGTACAAGCTGTCATTCCAACAATAGAATATGACTACACAAGACACTTCACAATGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 29 .03 RPM
SRP007412_cerebellum 23 .10 RPM
SRP007412_heart 14 .75 RPM
SRP007412_kidney 25 .13 RPM
SRP007412_liver 21 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018116 ortholog_one2many 1 retrogene
retro_amel_645,
Callithrix jacchus ENSCJAG00000020358 ortholog_one2one 1 retrogene
retro_cjac_2756,
Equus caballus ENSECAG00000011954 ortholog_one2one 1 retrogene
retro_ecab_594,
Homo sapiens ENSG00000144848 ortholog_one2one 1 retrogene
retro_hsap_2479,
Gorilla gorilla ENSGGOG00000006637 ortholog_one2one 1 retrogene
retro_ggor_1544,
Myotis lucifugus ENSMLUG00000001573 ortholog_one2one 1 retrogene
retro_mluc_1025,
Macaca mulatta ENSMMUG00000014232 ortholog_one2one 1 retrogene
retro_mmul_594,
Mustela putorius furo ENSMPUG00000000321 ortholog_one2many 2 retrogenes
retro_mputfur_1064, retro_mputfur_1614,
Nomascus leucogenys ENSNLEG00000004302 ortholog_one2one 2 retrogenes
retro_nleu_268, retro_nleu_331,
Oryctolagus cuniculus ENSOCUG00000015651 ortholog_one2many 1 retrogene
retro_ocun_1219,
Pan troglodytes ENSPTRG00000015220 ortholog_one2one 1 retrogene
retro_ptro_1434,
Pteropus vampyrus ENSPVAG00000009568 ortholog_one2one 1 retrogene
retro_pvam_1399,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1827 64.98 81.15
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Download FASTA sequences of all ENSPPYG00000013548 retrocopies