Parental gene:

ATG3, ENSCJAG00000020358

Aliases:None
Description:autophagy related 3 [Source:HGNC Symbol;Acc:20962]
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:83348387..83376099(-)


>ENSCJAG00000020358
ATGCAGAATGTGATTAACACGGTGAAGGGAAAGGCACTGGAAGTGGCTGAGTACCTGACCCCGGTCCTCAAGGAATCCAA
GTTTAAGGAAACAGGTGTAATCACCCCAGAAGAGTTTGTGGCAGCTGGAGATCACTTAGTCCACCACTGTCCAACATGGC
AATGGGCTACAGGGGAAGAATTGAAAGTGAAGGCATACCTACCAACAGGCAAACAATTTTTGGTAACCAAAAATGTGCCG
TGCTATAAGCGGTGCAAACAGATGGAATATTCAGATGAATTGGAAGCTATCATTGAAGAAGATGATGGTGATGGTGGATG
GGTAGATACATATCACAACACAGGTATTACAGGAATAACCGAAGCAGTTAAAGAGCTCACACTGGAAAACAAGAAGGACA
CTATAAAGCTTCAAGATTGCTCAGCACTATTTTCCCAAGATTCTGAAAAGACCTACTCCAGAGTTCTTTTTATAACAGAA
TATGAAGAGAGTGGATTGTTGGAAACAGATGAGGCTACCCTTGATACAAGGAAAATAGTAGAAGCTTGTAAAGCCAAAAC
TGATGCTGGCGGTGAAGATGCTATTTTGCAAACCAGAACTTACGACCTTTACATCACTTATGATAAATATTACCAGACTC
CACGATTATGGTTATTTGGCTATGATGAGCAACGGCAGCCTTTAACAGTTGAGCACATGTATGAAGACATCAGTCAAGAT
CATGTGAAGAAAACAGTGACCATTGAAAATCACCCTCATCTCCCACCACCTCCCATGTGTTCAGTTCACCCATGCAGGCA
TGCGGAGGTGATGAAGAAAATCATTGAGACTGTTGCAGAAGGAGGGGGAGAGCTTGGAGTTCATATGTATCTTCTTATTT
TCTTGAAATTTGTACAAGCTGTCATTCCAACAATAGAATATGACTACACAAGACACTTCACAATGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 46 .55 RPM
SRP051959_skeletal_muscle 20 .66 RPM
SRP051959_lymph_node 19 .86 RPM
SRP051959_lung 26 .01 RPM
SRP051959_liver 42 .50 RPM
SRP051959_kidney 27 .95 RPM
SRP051959_heart 18 .50 RPM
SRP051959_colon 18 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018116 ortholog_one2many 1 retrogene
retro_amel_645,
Equus caballus ENSECAG00000011954 ortholog_one2one 1 retrogene
retro_ecab_594,
Homo sapiens ENSG00000144848 ortholog_one2one 1 retrogene
retro_hsap_2479,
Gorilla gorilla ENSGGOG00000006637 ortholog_one2one 1 retrogene
retro_ggor_1544,
Myotis lucifugus ENSMLUG00000001573 ortholog_one2one 1 retrogene
retro_mluc_1025,
Macaca mulatta ENSMMUG00000014232 ortholog_one2one 1 retrogene
retro_mmul_594,
Mustela putorius furo ENSMPUG00000000321 ortholog_one2many 2 retrogenes
retro_mputfur_1064, retro_mputfur_1614,
Nomascus leucogenys ENSNLEG00000004302 ortholog_one2one 2 retrogenes
retro_nleu_268, retro_nleu_331,
Oryctolagus cuniculus ENSOCUG00000015651 ortholog_one2many 1 retrogene
retro_ocun_1219,
Pongo abelii ENSPPYG00000013548 ortholog_one2one 1 retrogene
retro_pabe_1827,
Pan troglodytes ENSPTRG00000015220 ortholog_one2one 1 retrogene
retro_ptro_1434,
Pteropus vampyrus ENSPVAG00000009568 ortholog_one2one 1 retrogene
retro_pvam_1399,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2756 81.33 98.09
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Download FASTA sequences of all ENSCJAG00000020358 retrocopies