Parental gene: | HADHA, ENSPPYG00000012583 |
| Aliases: | None |
| Description: | trifunctional enzyme subunit alpha, mitochondrial [Source:RefSeq peptide;Acc:NP_001126017] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 2a:85909073..85974693(+) |
>ENSPPYG00000012583
ATGGTGGCCTGCCGGGCGATTGGCATCCTCAGCCGCTTCTCTGCCTTCAGGATCCTCCGCTCCCGAGGTTATATATGCCG
CAATTTTACAGGGTCTTCTGCTTTGCTGACCAGAACCCATATTAACTATGGAGTCAAAGGGGATGTGGCAGTTGTTCGAA
TTAACTCTCCCAATTCAAAGGTAAATACACTGAGTAAAGAGCTGCATTCAGAGTTCTCAGAAGTTATGAATGAAATCTGG
GCCAGTGATCAAATCAGAAGTGCCGTCCTTATCTCATCAAAGCCAGGCTGCTTTATTGCAGGTGCTGATATCAACATGTT
AGCTGCTTGCAAGACCCTTCAAGAAGTAACACAGCTATCACAAGAAGCACAGAGAATAGTTGAGAAACTTGAAAAGTCCA
CAAAGCCTATTGTGGCTGCCATCAATGGATCCTGCCTGGGAGGAGGACTTGAGCTTGCCATTTCATGCCAATACAGAATA
GCAACAAAAGACAGAAAAACAGTATTAGGTACCCCTGAAGTCTTGCTGGGGGCCTTACCAGGAGCAGGAGGCACACAAAG
GCTGCCCAAAATGGTGGGTGTGCCTGCTGCTTTGGACATGATGCTGACTGGTAGAAGCATTCGTGCAGACAGGGCAAAGA
AAATGGGACTGGTTGACCAACTGGTGGAACCCCTGGGACCAGGACTAAAACCTCCAGAGGAACGGACAATGGAATACCTA
GAAGAAGTTGCAATTACTTTCGCCAAAGGACTAGCTGATAAGAAGATCTCTCCAAAGAGAGACAAGGGATTGGTGGAAAA
ATTGACAGCGTACGCCATGACTATTCCATTTGTCAGGCAACAGGTTTACAAAAAAGTGGAAGAAAAAGTGCGAAAGCAGA
CTAAAGGCCTTTATCCTGCACCTCTGAAAATAATAGATGTGGTAAAGACTGGAATTGAGCAAGGGAGTGATGCTGGTTAT
CTCTCTGAATCTCAGAAATTTGGAGAGCTTGTAATGACCAAAGAATCAAAGGCCTTGATGGGACTCTACCATGGTCAGGT
CCTGTGCAAGAAGAATAAATTTGGAGCTCCACAGAAGGATGTTAAGCATCTGGCTATTCTTGGTGCAGGGCTGATGGGAG
CAGGCATCGCCCAGGTCTCCGTGGATAAGGGGCTAAAGACTATACTTAAAGATGCCACCCTCACTGCGCTAGACCGAGGA
CAGCAACAAGTGTTCAAAGGATTGAATGATAAAGTGAAGAAGAAAGCTCTAACATCATTTGAAAGGGATTCCATCTTCAG
CAACTTGACTGGGCAGCTTGATTACCAAGGTTTTGAAAAGGCCGACATGGTGATTGAAGCTGTGTTTGAGGACCTTAGTC
TTAAGCACAGAGTGCTAAAGGAAGTAGAAGCGGTGATTCCAGATCACTGTATCTTTGCCAGTAACACATCTGCTCTCCCA
ATCAGTGAAATCGCTGCTGTCAGCAAAAGACCTGAGAAGGTGATTGGCATGCACTACTTCTCGCCGGTGGACAAGATGCA
GCTGCTGGAGATTATCACGACCGAGAAAACTTCCAAAGACACCAGTGCTTCAGCTGTAGCAGTTGGTCTCAAGCAGGGGA
AGGTCATTATTGTGGTTAAGGATGGACCTGGCTTCTATACTACCAGGTGTCTTGCGCCCATGATGTCTGAAGTCATCCGA
ATCCTCCAGGAAGGAGTTGACCCGAAGAAGCTGGATTCCCTGACCACAAGCTTTGGCTTTCCTGTGGGTGCCGCCACACT
GGTGGATGAAGTTGGTGTGGATGTAGCGAAACATGTGGCAGAAGATCTGGGCAAAGTCTTTGGGGAGCGGTTTGGAGGTG
GAAACCCAGAACTGCTGACACAGATGGTGTCCAAGGGCTTCCTAGGTCGCAAATCTGGGAAGGGCTTTTACATCTATCAG
GAGGGTGTGAAGAGGAAGGATTTGAATTCTGACATGGATAGTATTTTAGCGAGTCTGAAGCTGCCTCCTAAGTCTGAAGT
CTCGTCAGACGAAGACATCCAGTTCCGTCTGGTGACAAGATTTGTGAATGAGGCAGTCATGTGCCTGCAAGAGGGGATCT
TGGCCACACCTGCAGAGGGAGACATCGGAGCCGTCTTTGGGCTCGGCTTCCCGCCTTGTCTTGGAGGGCCTTTCCGCTTT
GTGGATCTGTATGGCGCCCAGAAGACAGTGGACCGGCTCAAGAAGTATGAAGCTGCCTATGGAAAACAGTTCACCCCATG
CCAGCTGCTAGCTGACCATGCTAACAGCCCTAACAAGAAGTTCTACCAGTGA
ATGGTGGCCTGCCGGGCGATTGGCATCCTCAGCCGCTTCTCTGCCTTCAGGATCCTCCGCTCCCGAGGTTATATATGCCG
CAATTTTACAGGGTCTTCTGCTTTGCTGACCAGAACCCATATTAACTATGGAGTCAAAGGGGATGTGGCAGTTGTTCGAA
TTAACTCTCCCAATTCAAAGGTAAATACACTGAGTAAAGAGCTGCATTCAGAGTTCTCAGAAGTTATGAATGAAATCTGG
GCCAGTGATCAAATCAGAAGTGCCGTCCTTATCTCATCAAAGCCAGGCTGCTTTATTGCAGGTGCTGATATCAACATGTT
AGCTGCTTGCAAGACCCTTCAAGAAGTAACACAGCTATCACAAGAAGCACAGAGAATAGTTGAGAAACTTGAAAAGTCCA
CAAAGCCTATTGTGGCTGCCATCAATGGATCCTGCCTGGGAGGAGGACTTGAGCTTGCCATTTCATGCCAATACAGAATA
GCAACAAAAGACAGAAAAACAGTATTAGGTACCCCTGAAGTCTTGCTGGGGGCCTTACCAGGAGCAGGAGGCACACAAAG
GCTGCCCAAAATGGTGGGTGTGCCTGCTGCTTTGGACATGATGCTGACTGGTAGAAGCATTCGTGCAGACAGGGCAAAGA
AAATGGGACTGGTTGACCAACTGGTGGAACCCCTGGGACCAGGACTAAAACCTCCAGAGGAACGGACAATGGAATACCTA
GAAGAAGTTGCAATTACTTTCGCCAAAGGACTAGCTGATAAGAAGATCTCTCCAAAGAGAGACAAGGGATTGGTGGAAAA
ATTGACAGCGTACGCCATGACTATTCCATTTGTCAGGCAACAGGTTTACAAAAAAGTGGAAGAAAAAGTGCGAAAGCAGA
CTAAAGGCCTTTATCCTGCACCTCTGAAAATAATAGATGTGGTAAAGACTGGAATTGAGCAAGGGAGTGATGCTGGTTAT
CTCTCTGAATCTCAGAAATTTGGAGAGCTTGTAATGACCAAAGAATCAAAGGCCTTGATGGGACTCTACCATGGTCAGGT
CCTGTGCAAGAAGAATAAATTTGGAGCTCCACAGAAGGATGTTAAGCATCTGGCTATTCTTGGTGCAGGGCTGATGGGAG
CAGGCATCGCCCAGGTCTCCGTGGATAAGGGGCTAAAGACTATACTTAAAGATGCCACCCTCACTGCGCTAGACCGAGGA
CAGCAACAAGTGTTCAAAGGATTGAATGATAAAGTGAAGAAGAAAGCTCTAACATCATTTGAAAGGGATTCCATCTTCAG
CAACTTGACTGGGCAGCTTGATTACCAAGGTTTTGAAAAGGCCGACATGGTGATTGAAGCTGTGTTTGAGGACCTTAGTC
TTAAGCACAGAGTGCTAAAGGAAGTAGAAGCGGTGATTCCAGATCACTGTATCTTTGCCAGTAACACATCTGCTCTCCCA
ATCAGTGAAATCGCTGCTGTCAGCAAAAGACCTGAGAAGGTGATTGGCATGCACTACTTCTCGCCGGTGGACAAGATGCA
GCTGCTGGAGATTATCACGACCGAGAAAACTTCCAAAGACACCAGTGCTTCAGCTGTAGCAGTTGGTCTCAAGCAGGGGA
AGGTCATTATTGTGGTTAAGGATGGACCTGGCTTCTATACTACCAGGTGTCTTGCGCCCATGATGTCTGAAGTCATCCGA
ATCCTCCAGGAAGGAGTTGACCCGAAGAAGCTGGATTCCCTGACCACAAGCTTTGGCTTTCCTGTGGGTGCCGCCACACT
GGTGGATGAAGTTGGTGTGGATGTAGCGAAACATGTGGCAGAAGATCTGGGCAAAGTCTTTGGGGAGCGGTTTGGAGGTG
GAAACCCAGAACTGCTGACACAGATGGTGTCCAAGGGCTTCCTAGGTCGCAAATCTGGGAAGGGCTTTTACATCTATCAG
GAGGGTGTGAAGAGGAAGGATTTGAATTCTGACATGGATAGTATTTTAGCGAGTCTGAAGCTGCCTCCTAAGTCTGAAGT
CTCGTCAGACGAAGACATCCAGTTCCGTCTGGTGACAAGATTTGTGAATGAGGCAGTCATGTGCCTGCAAGAGGGGATCT
TGGCCACACCTGCAGAGGGAGACATCGGAGCCGTCTTTGGGCTCGGCTTCCCGCCTTGTCTTGGAGGGCCTTTCCGCTTT
GTGGATCTGTATGGCGCCCAGAAGACAGTGGACCGGCTCAAGAAGTATGAAGCTGCCTATGGAAAACAGTTCACCCCATG
CCAGCTGCTAGCTGACCATGCTAACAGCCCTAACAAGAAGTTCTACCAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 49 .76 RPM |
| SRP007412_cerebellum | 45 .60 RPM |
| SRP007412_heart | 218 .31 RPM |
| SRP007412_kidney | 139 .08 RPM |
| SRP007412_liver | 94 .41 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000006972 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000084754 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000004918 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000004380 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000008546 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000001616 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000014986 | within_species_paralog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000011732 | ortholog_one2one | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000001593 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_817 | 83.33 | 56.49 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2576 | 87.87 | 79.69 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000012583 retrocopies