Parental gene:

HADHA, ENSG00000084754

Aliases:HADHA, ECHA, GBP, HADH, LCEH, LCHAD, MTPA, TP-ALPHA
Description:hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit [Source:HGNC Symbol;Acc:4801]
Organism:Human (Homo sapiens)
Coordinates:2:26413503..26467594(-)


>ENSG00000084754
ATGGTGGCCTGCCGGGCGATTGGCATCCTCAGCCGCTTTTCTGCCTTCAGGATCCTCCGCTCCCGAGGTTATATATGCCG
CAATTTTACAGGGTCTTCTGCTTTGCTGACCAGAACCCATATTAACTATGGAGTCAAAGGGGATGTGGCAGTTGTTCGAA
TTAACTCTCCCAATTCAAAGGTAAATACACTGAGTAAAGAGCTACATTCAGAGTTCTCAGAAGTTATGAATGAAATCTGG
GCTAGTGATCAAATCAGAAGTGCCGTCCTTATCTCATCAAAGCCAGGCTGCTTTATTGCAGGTGCTGATATCAACATGTT
AGCCGCTTGCAAGACCCTTCAAGAAGTAACACAGCTATCACAAGAAGCACAGAGAATAGTTGAGAAACTTGAAAAGTCCA
CAAAGCCTATTGTGGCTGCCATCAATGGATCCTGCCTGGGAGGAGGACTTGAGGTTGCCATTTCATGCCAATACAGAATA
GCAACAAAAGACAGAAAAACAGTATTAGGTACCCCTGAAGTTTTGCTGGGGGCCTTACCAGGAGCAGGAGGCACACAAAG
GCTGCCCAAAATGGTGGGTGTGCCTGCTGCTTTGGACATGATGCTGACTGGTAGAAGCATTCGTGCAGACAGGGCAAAGA
AAATGGGACTGGTTGACCAACTGGTGGAACCCCTGGGACCAGGACTAAAACCTCCAGAGGAACGGACAATAGAATACCTA
GAAGAAGTTGCAATTACTTTTGCCAAAGGACTAGCTGATAAGAAGATCTCTCCAAAGAGAGACAAGGGATTGGTGGAAAA
ATTGACAGCGTATGCCATGACTATTCCATTTGTCAGGCAACAGGTTTACAAAAAAGTGGAAGAAAAAGTGCGAAAGCAGA
CTAAAGGCCTTTATCCTGCACCTCTGAAAATAATTGATGTGGTAAAGACTGGAATTGAGCAAGGGAGTGATGCCGGTTAT
CTCTGTGAATCTCAGAAATTTGGAGAGCTTGTAATGACCAAAGAATCAAAGGCCTTGATGGGACTCTACCATGGTCAGGT
CCTGTGCAAGAAGAATAAATTTGGAGCTCCACAGAAGGATGTTAAGCATCTGGCTATTCTTGGTGCAGGGCTGATGGGAG
CAGGCATCGCCCAAGTCTCCGTGGATAAGGGGCTAAAGACTATACTTAAAGATGCCACCCTCACTGCGCTAGACCGAGGA
CAGCAACAAGTGTTCAAAGGATTGAATGACAAAGTGAAGAAGAAAGCTCTAACATCATTTGAAAGGGATTCCATCTTCAG
CAACTTGACTGGGCAGCTTGATTACCAAGGTTTTGAAAAGGCCGACATGGTGATTGAAGCTGTGTTTGAGGACCTTAGTC
TTAAGCACAGAGTGCTAAAGGAAGTAGAAGCGGTGATTCCAGATCACTGTATCTTTGCCAGTAACACATCTGCTCTCCCA
ATCAGTGAAATCGCTGCTGTCAGCAAAAGACCTGAGAAGGTGATTGGCATGCACTACTTCTCTCCCGTGGACAAGATGCA
GCTGCTGGAGATTATCACGACCGAGAAAACTTCCAAAGACACCAGTGCTTCAGCTGTAGCAGTTGGTCTCAAGCAGGGGA
AGGTCATCATTGTGGTTAAGGATGGACCTGGCTTCTATACTACCAGGTGTCTTGCGCCCATGATGTCTGAAGTCATCCGA
ATCCTCCAGGAAGGAGTTGACCCGAAGAAGCTGGATTCCCTGACCACAAGCTTTGGCTTTCCTGTGGGTGCCGCCACACT
GGTGGATGAAGTTGGTGTGGATGTAGCGAAACATGTGGCGGAAGATCTGGGCAAAGTCTTTGGGGAGCGGTTTGGAGGTG
GAAACCCAGAACTGCTGACACAGATGGTGTCCAAGGGCTTCCTAGGTCGTAAATCTGGGAAGGGCTTTTACATCTATCAG
GAGGGTGTGAAGAGGAAGGATTTGAATTCTGACATGGATAGTATTTTAGCGAGTCTGAAGCTGCCTCCTAAGTCTGAAGT
CTCATCAGACGAAGACATCCAGTTCCGCCTGGTGACAAGATTTGTGAATGAGGCAGTCATGTGCCTGCAAGAGGGGATCT
TGGCCACACCTGCAGAGGGAGACATCGGAGCCGTCTTTGGGCTTGGCTTCCCGCCTTGTCTGGGAGGGCCTTTCCGCTTT
GTGGATCTGTATGGCGCCCAGAAGATAGTGGACCGGCTCAAGAAATATGAAGCTGCCTATGGAAAACAGTTCACCCCATG
CCAGCTGCTAGCTGACCATGCTAACAGCCCTAACAAGAAGTTCTACCAGTGA

Library Parental gene expression (RPM)
bodymap2_liver 201 .44 RPM
bodymap2_lung 167 .60 RPM
bodymap2_breast 291 .95 RPM
bodymap2_adipose 404 .34 RPM
bodymap2_adrenal 212 .08 RPM
bodymap2_skeletal_muscle 560 .70 RPM
bodymap2_thyroid 278 .83 RPM
bodymap2_prostate 255 .25 RPM
bodymap2_colon 263 .14 RPM
bodymap2_testis 229 .03 RPM
bodymap2_brain 141 .04 RPM
bodymap2_heart 603 .51 RPM
bodymap2_white_blood_cells 294 .16 RPM
bodymap2_lymph_node 164 .12 RPM
bodymap2_ovary 264 .59 RPM
bodymap2_kidney 247 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000006972 ortholog_one2one 1 retrogene
retro_dnov_1863,
Homo sapiens ENSG00000138796 within_species_paralog 1 retrogene
retro_hsap_1571,
Gorilla gorilla ENSGGOG00000004918 ortholog_one2one 1 retrogene
retro_ggor_772,
Macaca mulatta ENSMMUG00000004380 ortholog_one2one 2 retrogenes
retro_mmul_1987, retro_mmul_787,
Mustela putorius furo ENSMPUG00000008546 ortholog_one2one 1 retrogene
retro_mputfur_705,
Nomascus leucogenys ENSNLEG00000001616 ortholog_one2one 2 retrogenes
retro_nleu_1588, retro_nleu_772,
Pongo abelii ENSPPYG00000012583 ortholog_one2one 2 retrogenes
retro_pabe_2576, retro_pabe_817,
Pan troglodytes ENSPTRG00000011732 ortholog_one2one 2 retrogenes
retro_ptro_2109, retro_ptro_664,
Ictidomys tridecemlineatus ENSSTOG00000001593 ortholog_one2one 1 retrogene
retro_itri_681,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_958 86.11 56.49
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Download FASTA sequences of all ENSG00000084754 retrocopies