Parental gene: | SPIC, ENSPPYG00000004873 |
| Aliases: | None |
| Description: | Spi-C transcription factor (Spi-1/PU.1 related) [Source:HGNC Symbol;Acc:29549] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 12:102825896..102843928(+) |
>ENSPPYG00000004873
ATGACGTGTGTTGAACAAGACAAGCTGGGTCAAGCATTTGAAGATGCTTTTGAGGTTCTGAGGCAACATTCAACGGGAGA
TCTTCAGTACTCGCCAGATTACAGAAATTACCTGGCTTTAATCAACCATCGTCCTCATGTCAAAGGAAATTCTAGCTGCT
ATGGAGTGTTGCCTACAGAGGAGCCTGTCTATAATTGGAGAACGGTAATTAACAGTGCTGCGGACTTCTATTTTGAAGGA
AATATTCATCAATCTCTGCAGAACATAACTGAAAACCAGCTGGTACAACCCACTGTTCTCCAGCAAAAGGGGGGAAAAGG
CAGGAAGAAGCTCCGACTGTTTGAATACCTTCATGAATCCCTGTATAATCCGGAGATGGCATCTTGTATTCAGTGGGTAG
ATAAAACCAAAGGCATCTTTCAGTTTGTGTCAAAAAACAAAGAAAAACTTGCCGAGCTTTGGGGGAAAAGAAAAGGCAAC
AGGAAGACCATGACTTACCAGAAAATGGCCAGGGCACTCAGAAATTACGGAAGAAGTGGGGAAATTACCAAAATCCGGAG
GAAGCTGACTTACCAGTTCAGTGAGGTCATTCTCCAAAGACTCTCTCCATCCTATTTCCTGGGGAAAGAGATCTTCTATT
CACAATGTGTTCAACCTGATCAAGAATATCTCAGTTTAAATAACTGGAATGCAAATTATAATTATACATATGCCAATTAC
CATGAGCTAAATCACCATGATTGCTAA
ATGACGTGTGTTGAACAAGACAAGCTGGGTCAAGCATTTGAAGATGCTTTTGAGGTTCTGAGGCAACATTCAACGGGAGA
TCTTCAGTACTCGCCAGATTACAGAAATTACCTGGCTTTAATCAACCATCGTCCTCATGTCAAAGGAAATTCTAGCTGCT
ATGGAGTGTTGCCTACAGAGGAGCCTGTCTATAATTGGAGAACGGTAATTAACAGTGCTGCGGACTTCTATTTTGAAGGA
AATATTCATCAATCTCTGCAGAACATAACTGAAAACCAGCTGGTACAACCCACTGTTCTCCAGCAAAAGGGGGGAAAAGG
CAGGAAGAAGCTCCGACTGTTTGAATACCTTCATGAATCCCTGTATAATCCGGAGATGGCATCTTGTATTCAGTGGGTAG
ATAAAACCAAAGGCATCTTTCAGTTTGTGTCAAAAAACAAAGAAAAACTTGCCGAGCTTTGGGGGAAAAGAAAAGGCAAC
AGGAAGACCATGACTTACCAGAAAATGGCCAGGGCACTCAGAAATTACGGAAGAAGTGGGGAAATTACCAAAATCCGGAG
GAAGCTGACTTACCAGTTCAGTGAGGTCATTCTCCAAAGACTCTCTCCATCCTATTTCCTGGGGAAAGAGATCTTCTATT
CACAATGTGTTCAACCTGATCAAGAATATCTCAGTTTAAATAACTGGAATGCAAATTATAATTATACATATGCCAATTAC
CATGAGCTAAATCACCATGATTGCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM |
| SRP007412_cerebellum | 0 .00 RPM |
| SRP007412_heart | 0 .00 RPM |
| SRP007412_kidney | 0 .03 RPM |
| SRP007412_liver | 0 .83 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000009904 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000001906 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000004496 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000009614 | ortholog_one2many | 1 retrogene | |
| Echinops telfairi | ENSETEG00000004217 | ortholog_one2one | 6 retrogenes | |
| Homo sapiens | ENSG00000166211 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000024597 | ortholog_one2one | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000015661 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000011052 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000020873 | possible_ortholog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000008070 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000015148 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000005351 | ortholog_one2one | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000005720 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000015457 | ortholog_one2many | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000017205 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_686 | 91.57 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1444 | 85.60 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_1445 | 88.81 | 57.66 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_2819 | 66.80 | 99.60 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000004873 retrocopies