Parental gene:

NPM3, ENSPPYG00000002589

Aliases:None
Description:Nucleoplasmin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q5RC37]
Organism:Orangutan (Pongo abelii)
Coordinates:10:100808325..100811000(-)


>ENSPPYG00000002589
ATGGGCGGGGCAGGAACTGGCCGAGGGTCCCCGGCTTTGTGCGTGTCGGGGGCGGAGTTTGAAGAAGGCCCTTGCAGTAT
GGCCGCCGGCACTGCAGCTGCCTTAGCGTTTTTGAGTCAGGAGAGCCGAACGCGGGCCGGGGGTGTCGGGGGCCTACGGG
TCCCGGCCCCGGTCACTATGGACAGTTTTTTCTTCGGCTGTGAGCTCTCCGGCCACACCCGCTCCTTCACCTTTAAGGTA
GAGGAAGAGGATGATGCGGAGCACGTGCTGGCACTAACCATGCTCTGCCTCACCGAGGGAGCCAAAGACGAGTGTAATGT
GGTAGAAGTTGTGGCCCGGAACCATGACCATCAGGAGATCGCAGTCCCTGTGGCCAACCTCAAGCTGTCCTGCCAACCCA
TGCTCAGTCTGGATGACTTCCAGCTCCAACCACCTGTAACCTTCCGCCTGAAGTCGGGCTCTGGCCCTGTGCGGATCACT
GGGCGGCACCAGATTGTTACGATGAGCAATGATGTTTCTGAGGAGGAGAGCGAGGAAGAGGAAGAGGAAGAGGACAGTGA
TGAGGAAGAAGCTGAGCTGTGCCCCATCCTTCCTGCCAAAAAGCAGGGGGGCAGGCCCTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 16 .53 RPM
SRP007412_cerebellum 2 .43 RPM
SRP007412_heart 12 .46 RPM
SRP007412_kidney 19 .29 RPM
SRP007412_liver 18 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017639 ortholog_one2many 2 retrogenes
retro_amel_1233, retro_amel_90,
Bos taurus ENSBTAG00000016335 ortholog_one2one 1 retrogene
retro_btau_1164,
Canis familiaris ENSCAFG00000009919 ortholog_one2one 2 retrogenes
retro_cfam_1968, retro_cfam_2064,
Callithrix jacchus ENSCJAG00000017650 ortholog_one2one 2 retrogenes
retro_cjac_2491, retro_cjac_3052,
Cavia porcellus ENSCPOG00000006301 ortholog_one2one 1 retrogene
retro_cpor_1315,
Dasypus novemcinctus ENSDNOG00000018876 ortholog_one2one 1 retrogene
retro_dnov_1279,
Dipodomys ordii ENSDORG00000003491 ortholog_one2one 1 retrogene
retro_dord_577,
Felis catus ENSFCAG00000007178 ortholog_one2many 1 retrogene
retro_fcat_1906,
Homo sapiens ENSG00000107833 ortholog_one2one 1 retrogene
retro_hsap_792,
Macropus eugenii ENSMEUG00000003465 ortholog_one2many 2 retrogenes
retro_meug_20, retro_meug_25,
Microcebus murinus ENSMICG00000011739 ortholog_one2one 1 retrogene
retro_mmur_126,
Myotis lucifugus ENSMLUG00000004961 ortholog_one2one 1 retrogene
retro_mluc_2333,
Macaca mulatta ENSMMUG00000015774 ortholog_one2one 1 retrogene
retro_mmul_1072,
Mustela putorius furo ENSMPUG00000016894 ortholog_one2one 2 retrogenes
retro_mputfur_750, retro_mputfur_759,
Mus musculus ENSMUSG00000056209 ortholog_one2one 2 retrogenes
retro_mmus_2756, retro_mmus_3479,
Ochotona princeps ENSOPRG00000009229 ortholog_one2one 2 retrogenes
retro_opri_1019, retro_opri_92,
Pongo abelii ENSPPYG00000016037 within_species_paralog 7 retrogenes
retro_pabe_2405, retro_pabe_3072, retro_pabe_3261, retro_pabe_3627, retro_pabe_3699, retro_pabe_486, retro_pabe_532,
Pan troglodytes ENSPTRG00000002875 ortholog_one2one 1 retrogene
retro_ptro_551,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_706 68.38 55.34
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Download FASTA sequences of all ENSPPYG00000002589 retrocopies