Parental gene:

YRDC, ENSPPYG00000001523

Aliases:None
Description:yrdC domain containing (E. coli) [Source:HGNC Symbol;Acc:28905]
Organism:Orangutan (Pongo abelii)
Coordinates:1:192357042..192361945(+)


>ENSPPYG00000001523
CCGTATATCGAATCTGCGGCCCCCGGAAACTTGCTGTCGTGGCTCCCGGGGAGACACTCAGTGCCCATCGCGAGCCCGGA
GCGCGGCGGCTGGACCGAGGCGCTGCGGGCCGCCGTGGCCGAGCTGCGCGCCGGCGCCGTGGTGGCCGTCCCCACCGATA
CGCTGTACGGCCTGGCCTGCGCGGCCAGCTGCTCGGCGGCTCTGCGCGCTGTGTACCGCCTCAAGGGCCGCAGCGAGGCC
AAACCTCTGGCCGTATGCCTCGGCCGCGTGGCCGACGTCTACAGATACTGCCGTGTGAGAGTACCTGAGGGGCTCCTGAA
AGACCTACTGCCAGGACCAGTGACCCTGGTGATGGAACGCTCGGAGGAGCTCAACAAGGACCTAAACCCTTTTACGCCTC
TTGTAGGCATTCGGATTCCTGATCATGCCTTTATGCAAGACTTGGCTCAGATGTTTGAGGGTCCGCTTGCTCTCACTAGT
GCCAACCTCAGCTCCCAGGCCAGTTCTCTGAATGTCGAGGAGTTCCAGGATCTCTGGCCTCAATTGTCCTTGGTTATTGA
TGGGGGACAAATTGGGGATGGCCAGAGCCCCGAGTGTCGCCTTGGCTCAACTGTGGTTGATTTGTCTGTGCCCGGAAAGT
TTGGCATCATTCGTCCAGGCTGTGCCCTGGAAAGTACTACAGCCATCCTCCAACAGAAGTACGGACTGCTCCCCTCACAT
GTGTCCTACCTG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 5 .75 RPM
SRP007412_cerebellum 6 .44 RPM
SRP007412_heart 1 .54 RPM
SRP007412_kidney 4 .51 RPM
SRP007412_liver 4 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001173 ortholog_one2one 1 retrogene
retro_amel_350,
Dasypus novemcinctus ENSDNOG00000009111 ortholog_one2one 2 retrogenes
retro_dnov_1774, retro_dnov_2232,
Equus caballus ENSECAG00000022522 ortholog_one2one 1 retrogene
retro_ecab_534,
Felis catus ENSFCAG00000011018 ortholog_one2one 1 retrogene
retro_fcat_375,
Homo sapiens ENSG00000196449 ortholog_one2one 2 retrogenes
retro_hsap_4199, retro_hsap_4289,
Gorilla gorilla ENSGGOG00000007619 ortholog_one2one 1 retrogene
retro_ggor_2866,
Macropus eugenii ENSMEUG00000005068 ortholog_one2one 1 retrogene
retro_meug_452,
Microcebus murinus ENSMICG00000011953 ortholog_one2one 1 retrogene
retro_mmur_188,
Myotis lucifugus ENSMLUG00000000955 ortholog_one2many 1 retrogene
retro_mluc_367,
Macaca mulatta ENSMMUG00000005372 ortholog_one2one 2 retrogenes
retro_mmul_1206, retro_mmul_1662,
Nomascus leucogenys ENSNLEG00000011665 ortholog_one2one 2 retrogenes
retro_nleu_1045, retro_nleu_1046,
Otolemur garnettii ENSOGAG00000030474 ortholog_one2one 2 retrogenes
retro_ogar_1107, retro_ogar_2342,
Pan troglodytes ENSPTRG00000000557 ortholog_one2one 4 retrogenes
retro_ptro_2850, retro_ptro_2906, retro_ptro_2907, retro_ptro_2999,
Tupaia belangeri ENSTBEG00000008863 ortholog_one2one 1 retrogene
retro_tbel_1817,
Tarsius syrichta ENSTSYG00000005555 ortholog_one2one 3 retrogenes
retro_tsyr_1108, retro_tsyr_1420, retro_tsyr_874,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3495 77.85 60.66
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Download FASTA sequences of all ENSPPYG00000001523 retrocopies