Parental gene:

YRDC, ENSDNOG00000009111

Aliases:None
Description:yrdC domain containing (E. coli) [Source:HGNC Symbol;Acc:28905]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_6486:35318..38656(-)


>ENSDNOG00000009111
ATGTCTCCGGCGCGTCGGTGCAGGGGGTTGAGATCCGCCGTGGCTGCCAGCGTAGGATTGAGTGAGGGGCCGACGGGCTC
CTCCCGGAGCGGCCGTCTCCTCCGCCCGCCGAGCCCTGCTCCGGCGGCGCCGGGGGCCCGGCTTTTGCGGCTCCCGGGGA
GCGGGGCCGTGCGGGCCGCGAGCCCCGAGCGCGCCGGCTGGACCGAGGCGCTGCGGGCCGCCGTGGCCGAGCTGCGCGCC
GGCGCCGTGGTAGCGGTCCCCACCGACACGTTGTACGGCCTGGCTTGCTCGGCGAGCTGCTCGGCGGCACTGGGCGCTGT
CTACCGCCTCAAGGGCCGCTGCAAAGCCAAGCCGCTGGCCGTTTGCTTGGGCAGCGTGGCCGACGTCTACAGGTTTTGCC
GGGTGAGGGTTCCCAAGGAGCTCTTGAAAGATCTCTTGCCAGGACCCGTTACCTTGGTGATGGAACGTTCGGAGGAGCTC
AACAAGGACCTGAACCCCTTCACTCCTCTTGTAGGCATCCGGATTCCTGACCATGCCTTCATGCAAGACTTGGCCCAGGT
GTTTGAGGGACCTCTTGCTCTCACCAGTGCCAACCTCAGCTCCCAGGCCAGTTCTCTGAATGTCAAGGAGTTCCAGGACC
TCTGGCCTCACTTGTCCCTGATCATTGATGGAGGGCCACTTGGGGATGGGCAGAGCCCTGAGTATCGCCTTGGCTCAACT
GTGGTTGACTTATCTGTGCCTGGAAAGTTTGGCATCATTCGTCCAGGCTGTGCCCTGGAAAGTACTACAGCCATCCTCCA
ACAGAAGTATGGCCTACTCCCCTTAGATGGATCCTGTCCGTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 6 .03 RPM
SRP012922_cerebellum 13 .61 RPM
SRP012922_heart 3 .71 RPM
SRP012922_kidney 10 .68 RPM
SRP012922_liver 4 .95 RPM
SRP012922_lung 8 .40 RPM
SRP012922_quadricep_muscle 3 .29 RPM
SRP012922_spleen 9 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001173 ortholog_one2one 1 retrogene
retro_amel_350,
Equus caballus ENSECAG00000022522 ortholog_one2one 1 retrogene
retro_ecab_534,
Felis catus ENSFCAG00000011018 ortholog_one2one 1 retrogene
retro_fcat_375,
Homo sapiens ENSG00000196449 ortholog_one2one 2 retrogenes
retro_hsap_4199, retro_hsap_4289,
Gorilla gorilla ENSGGOG00000007619 ortholog_one2one 1 retrogene
retro_ggor_2866,
Macropus eugenii ENSMEUG00000005068 ortholog_one2one 1 retrogene
retro_meug_452,
Microcebus murinus ENSMICG00000011953 ortholog_one2one 1 retrogene
retro_mmur_188,
Myotis lucifugus ENSMLUG00000000955 ortholog_one2many 1 retrogene
retro_mluc_367,
Macaca mulatta ENSMMUG00000005372 ortholog_one2one 2 retrogenes
retro_mmul_1206, retro_mmul_1662,
Nomascus leucogenys ENSNLEG00000011665 ortholog_one2one 2 retrogenes
retro_nleu_1045, retro_nleu_1046,
Otolemur garnettii ENSOGAG00000030474 ortholog_one2one 2 retrogenes
retro_ogar_1107, retro_ogar_2342,
Pongo abelii ENSPPYG00000001523 ortholog_one2one 1 retrogene
retro_pabe_3495,
Pan troglodytes ENSPTRG00000000557 ortholog_one2one 4 retrogenes
retro_ptro_2850, retro_ptro_2906, retro_ptro_2907, retro_ptro_2999,
Tupaia belangeri ENSTBEG00000008863 ortholog_one2one 1 retrogene
retro_tbel_1817,
Tarsius syrichta ENSTSYG00000005555 ortholog_one2one 3 retrogenes
retro_tsyr_1108, retro_tsyr_1420, retro_tsyr_874,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1774 67.16 72.50
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2. retro_dnov_2232 60.36 59.29
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Download FASTA sequences of all ENSDNOG00000009111 retrocopies