Parental gene:

CAPZA1, ENSPPYG00000001021

Aliases:None
Description:F-actin-capping protein subunit alpha-1 [Source:RefSeq peptide;Acc:NP_001127090]
Organism:Orangutan (Pongo abelii)
Coordinates:1:115556608..115610514(-)


>ENSPPYG00000001021
ATGGCCGACTTCGATGATCGTGTGTCGGATGAGGAGAAGGTACGCATAGCTGCTAAATTCATCACTCATGCACCCCCAGG
GGAATTTAATGAAGTATTCAATGACGTTCGGGTACTACTTAATAATGACAATCTCCTCAGGGAAGGGGCAGCACATGCAT
TTGCCCAGTATAACATGGATCAGTTCACGCCTGTGAAGATAGAAGGATATGAAGATCAGGTCTTAATTACAGAGCACGGT
GACCTGGGTAATAGCAGATTTTTAGATCCAAGAAACAAAATTTCCTTTAAATTTGACCACTTACGGAAAGAAGCAAGTGA
CCCCCAGCCAGAAGAAGTAGATGGAGGTCTGAAGTCTTGGAGAGAATCCTGTGACAGTGCTTTAAGAGCCTATGTGAAAG
ACCATTATTCCAACGGCTTCTGTACTGTTTATGCTAAAACTATCGATGGTCAACAGACTATTATTGCATGTATTGAAAGC
CACCAGTTTCAGCCTAAAAACTTCTGGAATGGTCGTTGGAGATCAGAGTGGAAGTTCACCATCACACCACCTACAGCCCA
GGTGGTTGGAGTGCTTAAGATTCAGGTTCATTATTATGAAGATGGCAATGTTCAGTTGGTTAGTCATAAAGATGTACAGG
ATTCACTAACTGTTTCGAATGAAGCCCAAACTGCCAAGGAGTTTATTAAAATCATAGAGAATGCAGAAAACGAGTATCAG
ACAGCAATTAGTGAAAACTATCAAACAATGTCAGATACCACATTCAAGGCCTTGCGCCGGCAGCTTCCAGTTACCCGCAC
CAAAATCGACTGGAACAAGATACTCAGCTACAAGATTGGCAAAGAAATGCAGAATGCTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 22 .34 RPM
SRP007412_cerebellum 34 .90 RPM
SRP007412_heart 21 .28 RPM
SRP007412_kidney 33 .18 RPM
SRP007412_liver 54 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003570 ortholog_one2one 1 retrogene
retro_amel_219,
Callithrix jacchus ENSCJAG00000013548 ortholog_one2one 3 retrogenes
retro_cjac_2259, retro_cjac_2850, retro_cjac_4125,
Cavia porcellus ENSCPOG00000014532 ortholog_one2one 1 retrogene
retro_cpor_1155,
Dipodomys ordii ENSDORG00000000671 ortholog_one2one 3 retrogenes
retro_dord_224, retro_dord_265, retro_dord_44,
Felis catus ENSFCAG00000013303 ortholog_one2one 2 retrogenes
retro_fcat_700, retro_fcat_746,
Homo sapiens ENSG00000116489 ortholog_one2one 2 retrogenes
retro_hsap_2338, retro_hsap_4871,
Gorilla gorilla ENSGGOG00000023677 ortholog_one2one 1 retrogene
retro_ggor_1216,
Latimeria chalumnae ENSLACG00000017963 ortholog_one2one 1 retrogene
retro_lcha_20,
Macaca mulatta ENSMMUG00000015668 ortholog_one2one 2 retrogenes
retro_mmul_2612, retro_mmul_942,
Mus musculus ENSMUSG00000070372 possible_ortholog 4 retrogenes
retro_mmus_179, retro_mmus_1828, retro_mmus_3370, retro_mmus_349,
Nomascus leucogenys ENSNLEG00000004191 ortholog_one2one 1 retrogene
retro_nleu_1689,
Oryctolagus cuniculus ENSOCUG00000000270 ortholog_one2many 6 retrogenes
retro_ocun_1315, retro_ocun_1417, retro_ocun_1787, retro_ocun_301, retro_ocun_527, retro_ocun_555,
Otolemur garnettii ENSOGAG00000014074 ortholog_one2one 4 retrogenes
retro_ogar_1640, retro_ogar_2159, retro_ogar_3217, retro_ogar_845,
Pongo abelii ENSPPYG00000017933 within_species_paralog 1 retrogene
retro_pabe_1321,
Pan troglodytes ENSPTRG00000001110 ortholog_one2one 2 retrogenes
retro_ptro_1710, retro_ptro_3245,
Rattus norvegicus ENSRNOG00000013538 possible_ortholog 1 retrogene
retro_rnor_77,
Tupaia belangeri ENSTBEG00000001727 ortholog_one2one 5 retrogenes
retro_tbel_1870, retro_tbel_3525, retro_tbel_4327, retro_tbel_638, retro_tbel_868,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2116 89.71 60.49
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2. retro_pabe_3789 87.50 75.52
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Download FASTA sequences of all ENSPPYG00000001021 retrocopies