Parental gene:

MMU.3877, ENSMMUG00000015668

Aliases:None
Description:F-actin-capping protein subunit alpha-1 [Source:RefSeq peptide;Acc:NP_001248143]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:1:115638372..115661248(+)


>ENSMMUG00000015668
GTACGCATAGCTGCTAAATTCATCACTCATGCACCCCCAGGGGAATTTAATGAAGTATTCAATGATGTTCGGCTACTACT
TAATAATGACAATCTCCTCAGGGAAGGGGCAGCACATGCATTTGCCCAGTATAACATGGATCAGTTCACGCCTGTGAAGA
TAGAAGGATATGAAGATCAGGTCTTAATTACAGAGCACGGTGACCTGGGTAATAGCAGATTTTTAGATCCAAGAAACAAA
ATTTCCTTTAAATTTGACCACTTACGGAAAGAAGCAAGTGACCCTCAGCCAGAAGAAGTAGATGGAGGTCTGAAGTCTTG
GAGAGAATCCTGTGACAGTGCTTTAAGAGCCTATGTGAAAGACCATTATTCCAACGGCTTCTGTACTGTTTATGCTAAAA
CTATCGATGGGCAACAGACTATTATTGCATGTATTGAAAGCCACCAGTTTCAGCCTAAAAACTTCTGGAATGGTCGTTGG
AGATCAGAGTGGAAGTTCACCATCACACCACCTACAGCCCAGGTGGTTGGAGTGCTTAAGATTCAGGTTCACTATTATGA
AGATGGCAATGTTCAGTTGGTTAGTCATAAAGATGTACAGGATTCACTAACTGTTTCAAATGAAGCCCAAACTGCCAAGG
AGTTTATTAAAATCATAGAGAATGCAGAAAATGAGTATCAGACAGCAATTAGTGAAAACTATCAAACAATGTCAGATACC
ACATTCAAGGCCTTGCGCCGGCAGCTTCCAGTTACCCGCACCAAAATCGACTGGAACAAGATACTCAGCTACAAGATTGG
CAAAGAAATGCAGAATGCTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 31 .18 RPM
SRP007412_brain 46 .39 RPM
SRP007412_cerebellum 49 .21 RPM
SRP007412_heart 34 .51 RPM
SRP007412_kidney 50 .12 RPM
SRP007412_liver 33 .77 RPM
SRP007412_testis 98 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003570 ortholog_one2one 1 retrogene
retro_amel_219,
Callithrix jacchus ENSCJAG00000013548 ortholog_one2one 3 retrogenes
retro_cjac_2259, retro_cjac_2850, retro_cjac_4125,
Cavia porcellus ENSCPOG00000014532 ortholog_one2one 1 retrogene
retro_cpor_1155,
Dipodomys ordii ENSDORG00000000671 ortholog_one2one 3 retrogenes
retro_dord_224, retro_dord_265, retro_dord_44,
Felis catus ENSFCAG00000013303 ortholog_one2one 2 retrogenes
retro_fcat_700, retro_fcat_746,
Homo sapiens ENSG00000116489 ortholog_one2one 2 retrogenes
retro_hsap_2338, retro_hsap_4871,
Gorilla gorilla ENSGGOG00000023677 ortholog_one2one 1 retrogene
retro_ggor_1216,
Latimeria chalumnae ENSLACG00000017963 ortholog_one2one 1 retrogene
retro_lcha_20,
Mus musculus ENSMUSG00000070372 possible_ortholog 4 retrogenes
retro_mmus_179, retro_mmus_1828, retro_mmus_3370, retro_mmus_349,
Nomascus leucogenys ENSNLEG00000004191 ortholog_one2one 1 retrogene
retro_nleu_1689,
Oryctolagus cuniculus ENSOCUG00000000270 ortholog_one2many 6 retrogenes
retro_ocun_1315, retro_ocun_1417, retro_ocun_1787, retro_ocun_301, retro_ocun_527, retro_ocun_555,
Otolemur garnettii ENSOGAG00000014074 ortholog_one2one 4 retrogenes
retro_ogar_1640, retro_ogar_2159, retro_ogar_3217, retro_ogar_845,
Pongo abelii ENSPPYG00000001021 ortholog_one2one 2 retrogenes
retro_pabe_2116, retro_pabe_3789,
Pan troglodytes ENSPTRG00000001110 ortholog_one2one 2 retrogenes
retro_ptro_1710, retro_ptro_3245,
Rattus norvegicus ENSRNOG00000013538 possible_ortholog 1 retrogene
retro_rnor_77,
Tupaia belangeri ENSTBEG00000001727 ortholog_one2one 5 retrogenes
retro_tbel_1870, retro_tbel_3525, retro_tbel_4327, retro_tbel_638, retro_tbel_868,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_942 87.55 100.00
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2. retro_mmul_2612 85.51 100.00
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Download FASTA sequences of all ENSMMUG00000015668 retrocopies