Parental gene: | ENSOCUG00000011872 |
| Aliases: | None |
| Description: | None |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 5:3974767..4028921(+) |
>ENSOCUG00000011872
ATGAGCGGGGGCACCCCTTACATCGGCAGCAAGATCAGCCTCATCTCCAAAGCGGAGATCCGCTACGAGGGCATCCTCTA
CACCATCGACACCGAGAACTCCACGGTAGCCCTCGCCAAAGTTCGATCCTTTGGTACAGAAGACAGACCAACAGATCGTC
CAATACCACCTCGAGATGAAGTCTTTGAATACATCATATTCCGTGGGAGTGATATTAAAGACCTCACCGTTTGTGAGCCA
CCGAAACCACAGTGCTCTTTGCCTCAGGACCCAGCTATCGTGCAGTCTTCACTAGGTTCATCTGCTTCTTCATTCCAGTC
AGTGGGTTCCTACGGACCTTTTGGCAGGATGCCGACATATAGTCAGTTCAGTCCAAGTTCATTAGTCGGGCAGCAGTTTG
GTACTGTTGGTGTTGCTGGAAGTTCCTTGACATCATTTGGAACTGAAACATCAAACAGTGGTACTTTGTCCCAAAGCAGT
GCAGTTGGTTCTGCCTTTACACAGGATACACGAGCTATAAAAACGCAGTTATCTCAAGGTCGGTCAAGCCCTCAGTTAGA
TCCTTTGAGAAAAAGCCCAACCATGGAACAAGCAGTACAGACCGCCTCGGCCCACTTACCTGCTCCAGCACCTGTTGGGA
GAAGGAGCCCTGTATCAACCAGGCCTTTGCCATCTACCAGCCAAAAAGCAATAGAGAATCAAGAGCACAGGCGAGCTGAA
GTACACAAAGTTTCAAGACCAGAAAATGAGCAACTCAGAAATGATAACAAGAGACAAGTAGTTCCAGGTGCTCCTTCAGC
TCCAAGGAGAGGGCGTGGAGGTCATCGAGGTGGCAGAGGAAGGTTTGGTATCCGGCGAGATGGTCCAATGAAATTTGAGA
AAGACTTTGACTTTGAAAGTGCAAATGCACAATTTAACAAGGAAGAGATCGACAGAGAGTTTCATAACAAACTTAAATTA
AAAGTAGAAGATAAACTTGAGAAACAGGAGAAACCTGTAAATGGTGAAGATAAAGGAGACTCAGGAGTTGATACACAAAA
CAGTGAAGGAAATGCAGATGAAGAAGATCCGCTTGGACCTAATTGCTACTATGACAAAACTAAATCTTTCTTTGACAATA
TTTCTTGTGATGATAACAGAGAACGAAGACCAACCTGGGCTGAGGAAAGAAGATTAAATGCCGAAACGTTTGGAATCCCA
CTCCGTCCAAACCGTGGCCGTGGAGGATACAGAGGCAGAGGAGGTCTTGGTTTCCGTGGTGGCCGAGGGCGTGGTAGCGG
GAGAGGTGGTGCCTTTACCACCCCTCGAGGATTCCGTGGTGCATTCAGAGGAGGTCGTGGGGGCAGAGAGTTTGCAGATT
TTGAGTATAGAAAAGTAAAAGATAGAAGTGTGATTTTT
ATGAGCGGGGGCACCCCTTACATCGGCAGCAAGATCAGCCTCATCTCCAAAGCGGAGATCCGCTACGAGGGCATCCTCTA
CACCATCGACACCGAGAACTCCACGGTAGCCCTCGCCAAAGTTCGATCCTTTGGTACAGAAGACAGACCAACAGATCGTC
CAATACCACCTCGAGATGAAGTCTTTGAATACATCATATTCCGTGGGAGTGATATTAAAGACCTCACCGTTTGTGAGCCA
CCGAAACCACAGTGCTCTTTGCCTCAGGACCCAGCTATCGTGCAGTCTTCACTAGGTTCATCTGCTTCTTCATTCCAGTC
AGTGGGTTCCTACGGACCTTTTGGCAGGATGCCGACATATAGTCAGTTCAGTCCAAGTTCATTAGTCGGGCAGCAGTTTG
GTACTGTTGGTGTTGCTGGAAGTTCCTTGACATCATTTGGAACTGAAACATCAAACAGTGGTACTTTGTCCCAAAGCAGT
GCAGTTGGTTCTGCCTTTACACAGGATACACGAGCTATAAAAACGCAGTTATCTCAAGGTCGGTCAAGCCCTCAGTTAGA
TCCTTTGAGAAAAAGCCCAACCATGGAACAAGCAGTACAGACCGCCTCGGCCCACTTACCTGCTCCAGCACCTGTTGGGA
GAAGGAGCCCTGTATCAACCAGGCCTTTGCCATCTACCAGCCAAAAAGCAATAGAGAATCAAGAGCACAGGCGAGCTGAA
GTACACAAAGTTTCAAGACCAGAAAATGAGCAACTCAGAAATGATAACAAGAGACAAGTAGTTCCAGGTGCTCCTTCAGC
TCCAAGGAGAGGGCGTGGAGGTCATCGAGGTGGCAGAGGAAGGTTTGGTATCCGGCGAGATGGTCCAATGAAATTTGAGA
AAGACTTTGACTTTGAAAGTGCAAATGCACAATTTAACAAGGAAGAGATCGACAGAGAGTTTCATAACAAACTTAAATTA
AAAGTAGAAGATAAACTTGAGAAACAGGAGAAACCTGTAAATGGTGAAGATAAAGGAGACTCAGGAGTTGATACACAAAA
CAGTGAAGGAAATGCAGATGAAGAAGATCCGCTTGGACCTAATTGCTACTATGACAAAACTAAATCTTTCTTTGACAATA
TTTCTTGTGATGATAACAGAGAACGAAGACCAACCTGGGCTGAGGAAAGAAGATTAAATGCCGAAACGTTTGGAATCCCA
CTCCGTCCAAACCGTGGCCGTGGAGGATACAGAGGCAGAGGAGGTCTTGGTTTCCGTGGTGGCCGAGGGCGTGGTAGCGG
GAGAGGTGGTGCCTTTACCACCCCTCGAGGATTCCGTGGTGCATTCAGAGGAGGTCGTGGGGGCAGAGAGTTTGCAGATT
TTGAGTATAGAAAAGTAAAAGATAGAAGTGTGATTTTT
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 14 .95 RPM |
| SRP017611_kidney | 31 .12 RPM |
| SRP017611_brain | 21 .47 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000006555 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000010360 | ortholog_one2many | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000001762 | ortholog_one2many | 1 retrogene | |
| Microcebus murinus | ENSMICG00000011598 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000003368 | ortholog_many2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000021614 | ortholog_many2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000011713 | ortholog_one2many | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000002492 | ortholog_one2many | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000009832 | ortholog_one2many | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000010813 | ortholog_one2many | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000021133 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000002785 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_193 | 98.03 | 98.71 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_860 | 89.49 | 67.24 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000011872 retrocopies