RetrogeneDB ID:

retro_ogar_67

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873767.1:1321860..1323153(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000024066
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:LSM14A
Ensembl ID:ENSOGAG00000002492
Aliases:None
Description:LSM14A, SCD6 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:24489]


Retrocopy-Parental alignment summary:






>retro_ogar_67
ATGAGCTGGAAGAACCCTTATATCGGCAGCAAGATCAGCCTCATTTCCAAGGCAGAGATCCGGTATGAAGGCATCCTGTA
CACCATCGACACCGAGAACGCCACTGTAGCCCTTGCCAAAGTTCAATCCTTTGGTACAGAAGACAGACCAACAGACTGTC
CAGTACCACCTGGAGAAGAAGTCTTTGAATACATTATATTCCGCAGGAATGCTATTAAACAGCTTACAGTTTGTGAGCCA
CCAAGACAGTACTCTTTGCCTCTAGACCCAGCCATCGTTCAGTTTTCACTAGGCTCATCTACACTAGGCTCATCTACTTC
GTTCGAGTCATTGGGTTCTTATGGACTTTTTGGTGGAATGCCGGCATACAATCATTTCAATCCGAGTTCATTATTTGGGC
AGCGGTTTGGCGCTGGTAGTGTTGCTGGAAGCTCTTTGACATCCTTTGGGACAGAAACATCAAACAGTGGTAACTTCTCT
CAAAGTAATGCAGTTGGTTCTACCTTTACACAGGATACGAGTTCTCTAAAATCACAGTTATTTCAGGGTCATTCACCCCC
TCAGTTACACCCTTTGAGAAAAAGCCCAATCATGGATCAAGCAGTACAGATTTCCTCAGCCAACTTACCTGCTCCAGCAC
CTATTGGGAGAAGGAGCTCTGTATCAACCAGGCCTTTGCCATCTATCAGCCAAATATCAGTAGAGAATCAAGAGCACAGT
CGAGTATATAAAGCTTCAAGACCAGAAAATGAGCAACTCAGAAAAGATAGCAAAAACCAAGTAGCTCCAGGTGCTCCTTC
ACCTCCAAGAAGAGGGTGTGGGGGTTATCGTGGTGACAGAGGAAAATTTGGTACTTGGGTAGATGTTCCAGTGAAATCTG
AGAAAGATTTTCAAAGTGCAAATGAACAATTTAACAAGGAGGAAATCAACAGAGAGTTTTATAATAAACTTAAATTAAAA
GAAGATAAACCTGAGAAACCAGAGAAGCCTGTAAATCGCAAAGGTAACGGAGACTCAGGAGTTGATACCAAGAAGAATGA
AGGAAATGCCAAAAAGGAAGGTCCACTTGGACCTAATTGCTATTATGACAAAACTAAATCCTTCTTTGATAATATTTCTT
GTGCTGATAATAGAGAACGGAGACCAACTCGGGCTGAAGAAAGAAGACTAAATGCGGAAACATTTGGAACCCCATTTAAT
CCGAACCGTGGCCGTGGGGGGTATAGAAGCAGAGGAGGGGTTGGTTTCCCTAATGATAGAGGGCGTGGTCGTGGGAGAGG
TGGGAACTCTACC

ORF - retro_ogar_67 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.94 %
Parental protein coverage: 93.35 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGS
MS...PYIGSKISLISKAEIRYEGILYTIDTEN.TVALAKV.SFGTEDRPTD.P.PP..EVFEYIIFR..
RetrocopyMSWKNPYIGSKISLISKAEIRYEGILYTIDTENATVALAKVQSFGTEDRPTDCPVPPGEEVFEYIIFRRN
ParentalDIKDLTVCEPPKPQCSLPQDPAIVQSSLGS----SASSFQSVGSYGPFGRMPTYSQFSPSSLVGQQFGAV
.IK.LTVCEPP..Q.SLP.DPAIVQ.SLGS....S..SF.S.GSYG.FG.MP.Y..F.PSSL.GQ.FGA.
RetrocopyAIKQLTVCEPPR-QYSLPLDPAIVQFSLGSSTLGSSTSFESLGSYGLFGGMPAYNHFNPSSLFGQRFGAG
ParentalGVAPQAGSSLTSFGTETSNSGTLSQSSAVGSAFTQDTRSLKTQLSQGRSSPQLDPLRKSPTMEQAVQTAS
.V...AGSSLTSFGTETSNSG..SQS.AVGS.FTQDT.SLK.QL.QG.S.PQL.PLRKSP.M.QAVQ..S
RetrocopySV---AGSSLTSFGTETSNSGNFSQSNAVGSTFTQDTSSLKSQLFQGHSPPQLHPLRKSPIMDQAVQISS