Parental gene:

ENSOCUG00000004065

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:12:25543354..25546258(+)


>ENSOCUG00000004065
ATGAGCAGCAAAGTCTCTCGCGACACCCTGTACGAGGCGGTGCGGGAAGTCCTGCACGGGAACCAGCGCAAGCGCCGGAA
GTTTCTGGAGACGGTGGAGCTGCAGATCAGCTTGAAGAATTATGACCCCCAGAAAGACAAACGCTTCTCGGGCACCGTCA
GGCTGAAGTCCACCCCCCGCCCCAAGTTCTCCGTGTGTGTCCTGGGCGACCAGCAGCACTGCGACGAGGCCAAGGCTGTG
GACATCCCCCACATGGACATCGAGGCGCTCAAGAAGCTCAACAAGAACAAGAAGCTAGTCAAGAAGCTGGCCAAGAAGTA
TGACGCCTTTTTGGCCTCAGAGTCTCTGATTAAGCAGATCCCACGAATCCTGGGCCCAGGCCTAAATAAGGCTGGCAAGT
TCCCCTCCCTGCTGACACACAATGAGAACATGGTGGCCAAAGTCGATGAGGTGAAGTCCACAATCAAGTTCCAGATGAAG
AAGGTGCTGTGTCTGGCCGTGGCAGTTGGCCACGTGAAGATGACAGACGATGAGCTTGTGTACAACATCCACCTGGCTGT
CAACTTCCTGGTGTCACTGCTGAAGAAGAATTGGCAGAATGTCCGGGCTTTGTACATCAAGAGCACCATGGGCAAGCCCC
AGCGCCTGTACTAA

Library Parental gene expression (RPM)
SRP017611_liver 67 .75 RPM
SRP017611_kidney 180 .92 RPM
SRP017611_brain 97 .90 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000670 possible_ortholog 13 retrogenes
retro_amel_1144, retro_amel_1223, retro_amel_1262, retro_amel_1591, retro_amel_1813, retro_amel_198, retro_amel_318, retro_amel_320, retro_amel_417, retro_amel_520, retro_amel_609, retro_amel_710, retro_amel_970,
Canis familiaris ENSCAFG00000001318 ortholog_one2one 18 retrogenes
retro_cfam_1118, retro_cfam_1200, retro_cfam_1222, retro_cfam_124, retro_cfam_1501, retro_cfam_1775, retro_cfam_1867, retro_cfam_2002, retro_cfam_2141, retro_cfam_281, retro_cfam_337, retro_cfam_347, retro_cfam_413, retro_cfam_847, retro_cfam_907, retro_cfam_911, retro_cfam_920, retro_cfam_986,
Echinops telfairi ENSETEG00000013325 possible_ortholog 2 retrogenes
retro_etel_1974, retro_etel_326,
Felis catus ENSFCAG00000012904 possible_ortholog 7 retrogenes
retro_fcat_1144, retro_fcat_1488, retro_fcat_1561, retro_fcat_1971, retro_fcat_210, retro_fcat_262, retro_fcat_560,
Homo sapiens ENSG00000198755 possible_ortholog 13 retrogenes
retro_hsap_142, retro_hsap_1462, retro_hsap_1710, retro_hsap_177, retro_hsap_1935, retro_hsap_2795, retro_hsap_3025, retro_hsap_3245, retro_hsap_3353, retro_hsap_337, retro_hsap_3949, retro_hsap_4025, retro_hsap_4040,
Gorilla gorilla ENSGGOG00000028140 ortholog_one2one 10 retrogenes
retro_ggor_1, retro_ggor_1124, retro_ggor_1282, retro_ggor_1407, retro_ggor_2088, retro_ggor_2273, retro_ggor_234, retro_ggor_2702, retro_ggor_358, retro_ggor_57,
Macropus eugenii ENSMEUG00000005760 ortholog_one2many 6 retrogenes
retro_meug_1337, retro_meug_1578, retro_meug_2066, retro_meug_407, retro_meug_541, retro_meug_705,
Myotis lucifugus ENSMLUG00000000080 ortholog_one2one 10 retrogenes
retro_mluc_1053, retro_mluc_1526, retro_mluc_1611, retro_mluc_1815, retro_mluc_1963, retro_mluc_1964, retro_mluc_2519, retro_mluc_751, retro_mluc_902, retro_mluc_918,
Macaca mulatta ENSMMUG00000015907 possible_ortholog 6 retrogenes
retro_mmul_1931, retro_mmul_2041, retro_mmul_2321, retro_mmul_2330, retro_mmul_306, retro_mmul_583,
Monodelphis domestica ENSMODG00000013766 ortholog_one2many 2 retrogenes
retro_mdom_276, retro_mdom_499,
Nomascus leucogenys ENSNLEG00000008650 possible_ortholog 13 retrogenes
retro_nleu_1174, retro_nleu_1210, retro_nleu_1697, retro_nleu_1778, retro_nleu_1980, retro_nleu_2055, retro_nleu_2342, retro_nleu_2436, retro_nleu_2879, retro_nleu_662, retro_nleu_838, retro_nleu_986, retro_nleu_989,
Ornithorhynchus anatinus ENSOANG00000014574 ortholog_one2many 1 retrogene
retro_oana_86,
Pan troglodytes ENSPTRG00000018085 ortholog_one2one 13 retrogenes
retro_ptro_1157, retro_ptro_1293, retro_ptro_142, retro_ptro_167, retro_ptro_1892, retro_ptro_2041, retro_ptro_2134, retro_ptro_2193, retro_ptro_2681, retro_ptro_269, retro_ptro_2729, retro_ptro_2737, retro_ptro_994,
Pteropus vampyrus ENSPVAG00000002763 ortholog_one2one 9 retrogenes
retro_pvam_1107, retro_pvam_1223, retro_pvam_123, retro_pvam_1294, retro_pvam_1440, retro_pvam_345, retro_pvam_722, retro_pvam_775, retro_pvam_906,
Rattus norvegicus ENSRNOG00000000505 possible_ortholog 4 retrogenes
retro_rnor_2302, retro_rnor_37, retro_rnor_400, retro_rnor_43,
Sarcophilus harrisii ENSSHAG00000002047 ortholog_one2many 1 retrogene
retro_shar_438,
Ictidomys tridecemlineatus ENSSTOG00000023366 ortholog_one2one 3 retrogenes
retro_itri_1097, retro_itri_524, retro_itri_847,
Tursiops truncatus ENSTTRG00000009431 possible_ortholog 6 retrogenes
retro_ttru_100, retro_ttru_1137, retro_ttru_1325, retro_ttru_1477, retro_ttru_205, retro_ttru_494,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_4 98.62 100.00
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2. retro_ocun_130 92.63 100.00
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Download FASTA sequences of all ENSOCUG00000004065 retrocopies