Parental gene:

RPL10A, ENSFCAG00000012904

Aliases:None
Description:ribosomal protein L10a [Source:HGNC Symbol;Acc:10299]
Organism:Cat (Felis catus)
Coordinates:B2:36774535..36778584(+)


>ENSFCAG00000012904
ATGAGCAGCAAAGTCTCCCGCGATACCCTGTACGAGGCGGTGCGGGAAGTCCTGCACGGGAACCAGCGCAAGCGCAGGAA
GTTTTTGGAGACCGTGGAGCTGCAGATCAGCTTGAAGAACTATGATCCTCAGAAGGACAAACGCTTCTCGGGCACCGTCA
GGCTTAAGTCCACTCCCCGCCCCAAGTTCTCCGTATGTGTGCTGGGGGACCAGCAGCACTGTGATGAGGCGAAGGCTGTG
GATATTCCCCACATGGACATTGAGGCTCTGAAGAAACTCAACAAGAATAAAAAGCTAGTCAAGAAGCTGGCCAAGAAGTA
TGATGCCTTTCTGGCTTCTGAATCTCTGATCAAGCAGATTCCACGAATCCTGGGCCCTGGCCTGAATAAGGCTGGCAAGT
TCCCTTCCTTGCTGACCCACAATGAGAATATGGTGGCCAAAGTGGATGAAGTGAAGTCCACAATCAAATTCCAGATGAAG
AAGGTGTTGTGTCTGGCAGTGGCTGTTGGCCACGTGAAGATGACAGATGATGAGCTTGTGTATAACATCCACTTAGCTGT
CAATTTCCTGGTGTCATTGCTCAAGAAGAATTGGCAGAATGTCCGGGCTTTATACATCAAGAGCACCATGGGCAAGCCCC
AACGCCTGTACTAA

Library Parental gene expression (RPM)
SRP017611_liver 174 .28 RPM
SRP017611_kidney 356 .48 RPM
SRP017611_brain 101 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000670 ortholog_one2one 13 retrogenes
retro_amel_1144, retro_amel_1223, retro_amel_1262, retro_amel_1591, retro_amel_1813, retro_amel_198, retro_amel_318, retro_amel_320, retro_amel_417, retro_amel_520, retro_amel_609, retro_amel_710, retro_amel_970,
Echinops telfairi ENSETEG00000013325 ortholog_one2many 2 retrogenes
retro_etel_1974, retro_etel_326,
Homo sapiens ENSG00000198755 ortholog_one2one 13 retrogenes
retro_hsap_142, retro_hsap_1462, retro_hsap_1710, retro_hsap_177, retro_hsap_1935, retro_hsap_2795, retro_hsap_3025, retro_hsap_3245, retro_hsap_3353, retro_hsap_337, retro_hsap_3949, retro_hsap_4025, retro_hsap_4040,
Gorilla gorilla ENSGGOG00000028140 possible_ortholog 10 retrogenes
retro_ggor_1, retro_ggor_1124, retro_ggor_1282, retro_ggor_1407, retro_ggor_2088, retro_ggor_2273, retro_ggor_234, retro_ggor_2702, retro_ggor_358, retro_ggor_57,
Macropus eugenii ENSMEUG00000005760 ortholog_one2many 6 retrogenes
retro_meug_1337, retro_meug_1578, retro_meug_2066, retro_meug_407, retro_meug_541, retro_meug_705,
Macaca mulatta ENSMMUG00000015907 ortholog_one2one 6 retrogenes
retro_mmul_1931, retro_mmul_2041, retro_mmul_2321, retro_mmul_2330, retro_mmul_306, retro_mmul_583,
Monodelphis domestica ENSMODG00000013766 ortholog_one2many 2 retrogenes
retro_mdom_276, retro_mdom_499,
Nomascus leucogenys ENSNLEG00000008650 ortholog_one2one 13 retrogenes
retro_nleu_1174, retro_nleu_1210, retro_nleu_1697, retro_nleu_1778, retro_nleu_1980, retro_nleu_2055, retro_nleu_2342, retro_nleu_2436, retro_nleu_2879, retro_nleu_662, retro_nleu_838, retro_nleu_986, retro_nleu_989,
Ornithorhynchus anatinus ENSOANG00000014574 ortholog_one2many 1 retrogene
retro_oana_86,
Oryctolagus cuniculus ENSOCUG00000004065 possible_ortholog 2 retrogenes
retro_ocun_130, retro_ocun_4,
Rattus norvegicus ENSRNOG00000000505 ortholog_one2many 4 retrogenes
retro_rnor_2302, retro_rnor_37, retro_rnor_400, retro_rnor_43,
Sarcophilus harrisii ENSSHAG00000002047 ortholog_one2many 1 retrogene
retro_shar_438,
Tursiops truncatus ENSTTRG00000009431 ortholog_one2one 6 retrogenes
retro_ttru_100, retro_ttru_1137, retro_ttru_1325, retro_ttru_1477, retro_ttru_205, retro_ttru_494,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_210 72.68 83.41
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2. retro_fcat_262 69.11 86.64
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3. retro_fcat_560 71.65 58.53
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4. retro_fcat_1144 75.78 57.60
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5. retro_fcat_1488 78.03 60.83
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6. retro_fcat_1561 68.25 86.18
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7. retro_fcat_1971 76.15 100.00
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Download FASTA sequences of all ENSFCAG00000012904 retrocopies