Parental gene: | Idi1, ENSMUSG00000058258 |
| Aliases: | Idi1, 4832416K17Rik |
| Description: | isopentenyl-diphosphate delta isomerase [Source:MGI Symbol;Acc:MGI:2442264] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 13:8885500..8892451(+) |
>ENSMUSG00000058258
ATGTGGCGCGGACGGACACTGGCGCGAGCGATTGGATATGCTGTTAGAGGGCGGGGCCTGGAGGCGGAGCATGCTGCGGA
GAGGATTGAAGTACAGCTCTCCGCACAGCTTCTCAGCACCTGCAGCCGGAATCTCTGTGTTCTAGGTCAGATCAGACATT
CTGTCACAATGCCTGAAATAAATACCAGCCATCTTGATGAAAAACAGGTTCAGCTTCTAGCGGAGATGTGTATTCTTATT
GATGAAAATGACAATAAAATTGGGGCTGACACCAAGAAAAACTGTCACCTTAATGAAAACATCGACAAAGGATTATTACA
TCGAGCTTTTAGTGTCTTCTTGTTTAATACTGAAAATAAGCTCCTGTTACAGCAGAGATCAGATGCTAAAATTACCTTTC
CAGGTTGTTTCACCAATAGTTGCTGTAGTCATCCATTAAGTAACCCAGGCGAGCTGGAAGAGAACAACGCCATTGGTGTG
AAGCGAGCAGCAAAGCGGCGCTTGAAAGCCGAGTTGGGAATACCCTTGGAAGAGGTTGATCTAAATGAAATGGATTATCT
AACAAGAATTTACTACAAGGCCCAATCTGATGGTATCTGGGGTGAACATGAAGTTGATTACATTCTGTTTCTGAGGAAGA
ATGTAACCTTGAATCCAGATCCCAACGAGATTAAAAGCTATTGCTATGTATCAAAGGAAGAAGTCAGAGAAATTTTGAAG
AAGGCAGCCAGTGGTGAAATTAAGTTAACTCCGTGGTTTAAGATAATTGCAGATACTTTCCTCTTCAAATGGTGGGATAA
CTTAAACCATTTGAGTCCATTTGTTGACCATGAGAAAATACATAGATTGTGA
ATGTGGCGCGGACGGACACTGGCGCGAGCGATTGGATATGCTGTTAGAGGGCGGGGCCTGGAGGCGGAGCATGCTGCGGA
GAGGATTGAAGTACAGCTCTCCGCACAGCTTCTCAGCACCTGCAGCCGGAATCTCTGTGTTCTAGGTCAGATCAGACATT
CTGTCACAATGCCTGAAATAAATACCAGCCATCTTGATGAAAAACAGGTTCAGCTTCTAGCGGAGATGTGTATTCTTATT
GATGAAAATGACAATAAAATTGGGGCTGACACCAAGAAAAACTGTCACCTTAATGAAAACATCGACAAAGGATTATTACA
TCGAGCTTTTAGTGTCTTCTTGTTTAATACTGAAAATAAGCTCCTGTTACAGCAGAGATCAGATGCTAAAATTACCTTTC
CAGGTTGTTTCACCAATAGTTGCTGTAGTCATCCATTAAGTAACCCAGGCGAGCTGGAAGAGAACAACGCCATTGGTGTG
AAGCGAGCAGCAAAGCGGCGCTTGAAAGCCGAGTTGGGAATACCCTTGGAAGAGGTTGATCTAAATGAAATGGATTATCT
AACAAGAATTTACTACAAGGCCCAATCTGATGGTATCTGGGGTGAACATGAAGTTGATTACATTCTGTTTCTGAGGAAGA
ATGTAACCTTGAATCCAGATCCCAACGAGATTAAAAGCTATTGCTATGTATCAAAGGAAGAAGTCAGAGAAATTTTGAAG
AAGGCAGCCAGTGGTGAAATTAAGTTAACTCCGTGGTTTAAGATAATTGCAGATACTTTCCTCTTCAAATGGTGGGATAA
CTTAAACCATTTGAGTCCATTTGTTGACCATGAGAAAATACATAGATTGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 3 .64 RPM |
| SRP007412_cerebellum | 1 .69 RPM |
| SRP007412_heart | 0 .72 RPM |
| SRP007412_kidney | 3 .58 RPM |
| SRP007412_liver | 20 .04 RPM |
| SRP007412_testis | 6 .72 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000008483 | ortholog_one2one | 3 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000012555 | ortholog_one2one | 3 retrogenes | |
| Homo sapiens | ENSG00000067064 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000000934 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000017115 | ortholog_one2one | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000005998 | ortholog_one2one | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000013594 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000007493 | ortholog_one2many | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000008692 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000002039 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000002239 | ortholog_one2one | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000023260 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000011174 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_417 | 78.31 | 66.08 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_552 | 78.11 | 59.36 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_2032 | 100.00 | 86.57 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmus_2660 | 95.14 | 87.28 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000058258 retrocopies