Parental gene: | IDI1, ENSMODG00000005998 |
| Aliases: | None |
| Description: | isopentenyl-diphosphate delta isomerase 1 [Source:HGNC Symbol;Acc:5387] |
| Organism: | Opossum (Monodelphis domestica) |
| Coordinates: | 8:229064063..229069066(-) |
>ENSMODG00000005998
GGGAGGGGGTCCAGGTGGGAAGGAGCGGATTTCATTGATGCTGACAAGAAACAATTTCTCCTCCTTTTTATCATCAGCTT
CTTGGGAAGGATTAAACATATTGCAACAATGCCCGAAATCAACACGGATGATCTGGATGAGCAGCAAGTTCAGCTCCTGG
CAGAGATGTGCATTCTTATTGATGAAAATGACAATAAGATCGGTGCAGAGACCAAAAAGAATTGCCATCTGAATGAAAAC
ATTGACAAAGGGTTATTACATCGAGCTTTTAGCGTCTTTTTATTTAATACAGAAAACAAATTATTACTGCAGCAGAGATC
AGATGCTAAAATTACTTTTCCAGGTTGTTTTACAAACACTTGTTGTAGCCATCCACTAAGCACTCCAGTCGAATTGGAAG
AAAATAATGCCATAGGAGTAAGGCGGGCAGCTCAGAGACGTTTAAAGGCTGAACTAGGGATCCCCATGGAACAGGTTCCT
CCAGAAGATATTTCCTATTTAACACGAATCCACTACAAAGCACAATCTGATGGGATTTGGGGAGAACATGAAATTGATTA
TATCTTGTTTGTGAGGAAGAATGTAACGTTAGATCCAGATCCTAATGAGATCAAAAGCTATTGTTATGTCACCAAGAAGG
AACTAGAAGAACTCCTGGAAAAAGCAGCTAATGGGGAAATTAAAATTACACCATGGTTCAAAATCATTGCTGAGACTTTT
CTTTTTAAATGGTGGGATAACTTGAATCATTTGAATCGATTTGTTGAACATGAGAAAATTCATAGAATGTAA
GGGAGGGGGTCCAGGTGGGAAGGAGCGGATTTCATTGATGCTGACAAGAAACAATTTCTCCTCCTTTTTATCATCAGCTT
CTTGGGAAGGATTAAACATATTGCAACAATGCCCGAAATCAACACGGATGATCTGGATGAGCAGCAAGTTCAGCTCCTGG
CAGAGATGTGCATTCTTATTGATGAAAATGACAATAAGATCGGTGCAGAGACCAAAAAGAATTGCCATCTGAATGAAAAC
ATTGACAAAGGGTTATTACATCGAGCTTTTAGCGTCTTTTTATTTAATACAGAAAACAAATTATTACTGCAGCAGAGATC
AGATGCTAAAATTACTTTTCCAGGTTGTTTTACAAACACTTGTTGTAGCCATCCACTAAGCACTCCAGTCGAATTGGAAG
AAAATAATGCCATAGGAGTAAGGCGGGCAGCTCAGAGACGTTTAAAGGCTGAACTAGGGATCCCCATGGAACAGGTTCCT
CCAGAAGATATTTCCTATTTAACACGAATCCACTACAAAGCACAATCTGATGGGATTTGGGGAGAACATGAAATTGATTA
TATCTTGTTTGTGAGGAAGAATGTAACGTTAGATCCAGATCCTAATGAGATCAAAAGCTATTGTTATGTCACCAAGAAGG
AACTAGAAGAACTCCTGGAAAAAGCAGCTAATGGGGAAATTAAAATTACACCATGGTTCAAAATCATTGCTGAGACTTTT
CTTTTTAAATGGTGGGATAACTTGAATCATTTGAATCGATTTGTTGAACATGAGAAAATTCATAGAATGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 0 .00 RPM |
| SRP007412_cerebellum | 0 .00 RPM |
| SRP007412_heart | 0 .00 RPM |
| SRP007412_kidney | 0 .00 RPM |
| SRP007412_liver | 0 .00 RPM |
| SRP007412_testis | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000008483 | ortholog_one2one | 3 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000012555 | ortholog_one2one | 3 retrogenes | |
| Homo sapiens | ENSG00000067064 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000000934 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000017115 | ortholog_one2one | 3 retrogenes | |
| Mus musculus | ENSMUSG00000058258 | ortholog_one2one | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000013594 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000007493 | ortholog_one2many | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000008692 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000002039 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000002239 | ortholog_one2one | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000023260 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000011174 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mdom_547 | 84.86 | 82.13 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mdom_1107 | 94.98 | 90.87 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mdom_1692 | 75.23 | 83.27 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mdom_1697 | 89.92 | 90.11 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_mdom_1724 | 91.45 | 88.97 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMODG00000005998 retrocopies