Parental gene: | Pogk, ENSMUSG00000040596 |
| Aliases: | Pogk, 9130401E23Rik, BASS2, mKIAA1513 |
| Description: | pogo transposable element with KRAB domain [Source:MGI Symbol;Acc:MGI:1918842] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 1:166384621..166409863(-) |
>ENSMUSG00000040596
ATGCCGGGCCACAGCCTTCGTCGCCCTTTGCGGCGACGCCGCCCGCTCGGCCGGGAAATGGAGTCCCGGGCCTACCCTCT
GAATTTGACCCTGAAAGAAGAGCAAAAGGAGGAAGAGGTTGAGATCCAAGAGTTGGAGGATGGCCCCATAGATATGCAGA
AAGTACAAATCTGCTCAGAAGGCGCATGGGTACCAGCTCTATTTGATGAGGTGGCCATATATTTCTCAGATGAGGAGTGG
GAAGTTCTGACAGAGCAACAAAAAGCCCTCTACCGGGAAGTCATGAGGATGAATTATGAGACTGTCCTGTCCCTGGAATT
CCCATTCCCCAAGCCAGATATGATCAATCGGTTGGAAAGGGACGAGGAGTGTCCTAATTCTGATGAGTGGCGGCTCCAGG
GAGTAACCTTTGCAGAAAATGAAGAATCTGACTTTAGGACTCCAGATTGGGCAAGCCCGACGAATGCCACCTCCCATTTT
CCTCAACCTCAGCCCTTCAACAGCTTTGGCCTGCGTCTGCCTCAGGACATCACTGAACTGCCTGAGTGGACTGAGGGCTA
CCCCTTCTATATGGCCATGGGCTTCCCCGGGTATGACCTCTCAGCTGACGACTTGGCGAGCAAGTTTCAGTTCAGTCGTG
GCATGCGCCGCAGTTATGATGCAGGGTTCAAGCTGATGGTGGTGGAGTACGCCGAGAGCACCAACAACTGTCAGGCTGCC
AAGCAGTTTGGGGTGTTGGAAAAAAATGTTCGAGACTGGCGCAAAGTGAAGCCACAGCTCCAAAATGCTCATGCCATGCG
GCGGGCATTCCGAGGCCCCAAGAATGGAAGGTTTGCTCTGGTAGACCAGCGAGTGGCTGAGTATGTCAGATACATGCAGG
CCAAAGGGGACCCTATCACTAGGGAGGCAATGCAGTTGAAAGCTCTTGAAATCGCCCAGGAAATGAACATTCCAGAGAAA
GGGTTCAAGGCAAGTCTGGGCTGGTGTCGAAGAATGATGAGAAGGTATGACCTGTCTCTGAGGCATAAAGTGCCAGTCCC
TCAACACCTGGCCGAGGACCTGACTGAAAAGCTTGTCACTTACCAGCAGAGTGTGCTGGCTCTGCGCAGGACACACGACT
ATGAAGTGGCCCAGATGGGCAATGCAGACGAGACGCCCATCTGCTTAGAAGTCCCCTCTAGAGTGACTGTTGACAACCAG
GGCGAAAAGCCCATCTTGGTCAAGACACCAGGCAGGGAGAAATTGAGGATCACAGCCATGCTGGGGGTCTTGGCTGATGG
GAGGAAGTTACCACCGTACATCATTTTGAGGGGAACATACATCCCCCCTGGGAAGTTTCCCAGTGGCATGGAGATCCGCT
GCCACCGCTACGGATGGATGACTGAGGACTTGATGCAAGACTGGTTGGAAGTTGTGTGGAGACGGAGAACTGGAGCTGTG
CCCAGACAGCGAGGGATGCTGATCCTGAATGGCTTCCGGTGCCATGCCACTGACTCTGTGAAGAGTTCCATGGAGAACAT
GAACACGGACATGGTGATCATCCCAGGGGGCCTGACCTCCCAGCTGCAGGTGCTGGATGTCGTTGTCTACAAGCCTCTGA
ACGACAGCGTTCGGGCCCAGTATTCCAACTGGCTTCTGGCTGGGAACCTGGCACTCAGCCCCACTGGAAATGCTAAGAAG
CCCCCCCTGGGCCTCTTCCTGGAGTGGATCATGGTTGCATGGAACAGCATCTCAAGTGAATCAATTGTCCAGGGGTTCAG
AAAGTGCCACATCTCCAGCAACTTAGAGGACGAAGGTGACGTCCTCTGGGAAATCGAGGGCGAGTTGCCCAAAGAACCGC
CAAAAGAATGTGGTCCTGAAAGTGTGGCTGAGGGTGACTGA
ATGCCGGGCCACAGCCTTCGTCGCCCTTTGCGGCGACGCCGCCCGCTCGGCCGGGAAATGGAGTCCCGGGCCTACCCTCT
GAATTTGACCCTGAAAGAAGAGCAAAAGGAGGAAGAGGTTGAGATCCAAGAGTTGGAGGATGGCCCCATAGATATGCAGA
AAGTACAAATCTGCTCAGAAGGCGCATGGGTACCAGCTCTATTTGATGAGGTGGCCATATATTTCTCAGATGAGGAGTGG
GAAGTTCTGACAGAGCAACAAAAAGCCCTCTACCGGGAAGTCATGAGGATGAATTATGAGACTGTCCTGTCCCTGGAATT
CCCATTCCCCAAGCCAGATATGATCAATCGGTTGGAAAGGGACGAGGAGTGTCCTAATTCTGATGAGTGGCGGCTCCAGG
GAGTAACCTTTGCAGAAAATGAAGAATCTGACTTTAGGACTCCAGATTGGGCAAGCCCGACGAATGCCACCTCCCATTTT
CCTCAACCTCAGCCCTTCAACAGCTTTGGCCTGCGTCTGCCTCAGGACATCACTGAACTGCCTGAGTGGACTGAGGGCTA
CCCCTTCTATATGGCCATGGGCTTCCCCGGGTATGACCTCTCAGCTGACGACTTGGCGAGCAAGTTTCAGTTCAGTCGTG
GCATGCGCCGCAGTTATGATGCAGGGTTCAAGCTGATGGTGGTGGAGTACGCCGAGAGCACCAACAACTGTCAGGCTGCC
AAGCAGTTTGGGGTGTTGGAAAAAAATGTTCGAGACTGGCGCAAAGTGAAGCCACAGCTCCAAAATGCTCATGCCATGCG
GCGGGCATTCCGAGGCCCCAAGAATGGAAGGTTTGCTCTGGTAGACCAGCGAGTGGCTGAGTATGTCAGATACATGCAGG
CCAAAGGGGACCCTATCACTAGGGAGGCAATGCAGTTGAAAGCTCTTGAAATCGCCCAGGAAATGAACATTCCAGAGAAA
GGGTTCAAGGCAAGTCTGGGCTGGTGTCGAAGAATGATGAGAAGGTATGACCTGTCTCTGAGGCATAAAGTGCCAGTCCC
TCAACACCTGGCCGAGGACCTGACTGAAAAGCTTGTCACTTACCAGCAGAGTGTGCTGGCTCTGCGCAGGACACACGACT
ATGAAGTGGCCCAGATGGGCAATGCAGACGAGACGCCCATCTGCTTAGAAGTCCCCTCTAGAGTGACTGTTGACAACCAG
GGCGAAAAGCCCATCTTGGTCAAGACACCAGGCAGGGAGAAATTGAGGATCACAGCCATGCTGGGGGTCTTGGCTGATGG
GAGGAAGTTACCACCGTACATCATTTTGAGGGGAACATACATCCCCCCTGGGAAGTTTCCCAGTGGCATGGAGATCCGCT
GCCACCGCTACGGATGGATGACTGAGGACTTGATGCAAGACTGGTTGGAAGTTGTGTGGAGACGGAGAACTGGAGCTGTG
CCCAGACAGCGAGGGATGCTGATCCTGAATGGCTTCCGGTGCCATGCCACTGACTCTGTGAAGAGTTCCATGGAGAACAT
GAACACGGACATGGTGATCATCCCAGGGGGCCTGACCTCCCAGCTGCAGGTGCTGGATGTCGTTGTCTACAAGCCTCTGA
ACGACAGCGTTCGGGCCCAGTATTCCAACTGGCTTCTGGCTGGGAACCTGGCACTCAGCCCCACTGGAAATGCTAAGAAG
CCCCCCCTGGGCCTCTTCCTGGAGTGGATCATGGTTGCATGGAACAGCATCTCAAGTGAATCAATTGTCCAGGGGTTCAG
AAAGTGCCACATCTCCAGCAACTTAGAGGACGAAGGTGACGTCCTCTGGGAAATCGAGGGCGAGTTGCCCAAAGAACCGC
CAAAAGAATGTGGTCCTGAAAGTGTGGCTGAGGGTGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 76 .28 RPM |
| SRP007412_cerebellum | 94 .62 RPM |
| SRP007412_heart | 25 .65 RPM |
| SRP007412_kidney | 31 .99 RPM |
| SRP007412_liver | 10 .76 RPM |
| SRP007412_testis | 29 .18 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000033914 | ortholog_one2one | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000006822 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000014393 | ortholog_one2many | 1 retrogene | |
| Latimeria chalumnae | ENSLACG00000014539 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000007615 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000011078 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_2572 | 80.70 | 51.14 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000040596 retrocopies